Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06785 ATGGAATCCAAAGGTGGAGAAGTGAGAAGGCTTCACATCATCTATTTCCTCAGTCACATGGGTGGTCGTGCAGAGCATCCACATCTCATTCGTGTTCTCCATTTAGCTCGTAATGGGGTTTATCTCCGAGATGTTAAGAGATGGCTTGGAGAATTGAGAGGAAAAGACTTGCCTGAAGCTTTTTCTTGGTCCTACAAGAGGAGGTACAAGACTGGGTATGTGTGGCAAGACTTGTTAGATGATGACCTCATAACCCCCATTTCTGATAATGAATACGTCCTCAAAGGATCACAAATCAACCCTACCCCATTTGAAACTCATTCACTTGATGAAAAGAAAATTGCTAATGACACACTGGCTGAAAAAAAATCCCCTCAAGTACAAGTTGTAGAGGACAAACAGCAGCCATCTCTAGCTGAAGAAGAACCTCAAATTCAACTAGACCCAGATTCAAAAAAGAATACTCTAACAAAAGTGTCATCAGAAATCAGCCAGGATTCATTGGTCTTCAGCTCAGACAGATCATCTGTGACAGATGATGACTCTTCTTCTAAGGTTGAAGAAGAGAAGCTCAATGAACAGAACAATGGGAAGTTAGAGAGTTTCTCATTGCCTTCCTTGTATCACAATCTGTTGAGTAAGAAGGGTAACAAAGATGACCAGAATAAAACTGACACACCTGATTCATCCTTTTCTACTACATCATCATCATCATCCCAATCCTCTTTTACTAAGATCAGAAGCAATTCTACTAGAGTTTCTAGTGTTTTCCGAAATTGGATTAGTTGTGGGACTGTGGAAACAAATGATGCAGCTGTAGTCCTGATGAACCAGGCTAATAAAATTGCCTCTAAGCAGCCTAACAACATACCAGAAAAAAGGGCTGAGATTTGTAAAGGAGACAGACTGGGAGGATCAGCTAGGTGTTTTGGTACTTCTTGGAATTATCATCACCAGAAAGAACAATATGGGGCCAGAAAAAGCTGTGATGGAGAGGAGACAAGCAGGAGCAGGAAAAAGTTAGGCGAGTTCATGAATCAAACTCATTACAAACCATTTGGGGGACCAATTTGCTCGCAATGTGGGAAGTCTTTCAAGCCTGAGAAAATGCACAAACACATGAAGTCCTGTAAAGGAATGAAAGCCACGGGAACGTCAGCTGCAACTGCTGCTGAGGAGAGACAGCTTCAGAGATCATCAACAACTTTGTGCAATAAAGATTACCTTTTGACCAACTAA 1239 0.4149 MESKGGEVRRLHIIYFLSHMGGRAEHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPEAFSWSYKRRYKTGYVWQDLLDDDLITPISDNEYVLKGSQINPTPFETHSLDEKKIANDTLAEKKSPQVQVVEDKQQPSLAEEEPQIQLDPDSKKNTLTKVSSEISQDSLVFSSDRSSVTDDDSSSKVEEEKLNEQNNGKLESFSLPSLYHNLLSKKGNKDDQNKTDTPDSSFSTTSSSSSQSSFTKIRSNSTRVSSVFRNWISCGTVETNDAAVVLMNQANKIASKQPNNIPEKRAEICKGDRLGGSARCFGTSWNYHHQKEQYGARKSCDGEETSRSRKKLGEFMNQTHYKPFGGPICSQCGKSFKPEKMHKHMKSCKGMKATGTSAATAAEERQLQRSSTTLCNKDYLLTN. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06785 412 MobiDBLite consensus disorder prediction 196 210 - -
Seca3g06785 412 MobiDBLite consensus disorder prediction 149 177 - -
Seca3g06785 412 MobiDBLite consensus disorder prediction 226 245 - -
Seca3g06785 412 MobiDBLite consensus disorder prediction 178 195 - -
Seca3g06785 412 Pfam Protein SOSEKI, plant 12 270 IPR010369 -
Seca3g06785 412 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 5 399 IPR010369 -
Seca3g06785 412 MobiDBLite consensus disorder prediction 120 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06785 Seca-Chr3 152431343 152434472 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g06785 DUF966 6.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06785 - - gmx:100785001 566.614