Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06762 ATGGATATGGTTTCAGCTGGGTACCATAAGGTCGCTAACCTCTGTGGAAGACGGGAAACTTGGAGACTCCGCTTAAAGCTTGTAAGGCAGTGGAAGATGTCTGCAGTCGCGACTCCTGATGATCCATTTGCCATGCATATGCTTTTCGTTGACCAAGAGGGTAACCGCATCGAGGCTGTCATTCAGAAGCATATGATGCACAGGTTCAACAACTCCGCCTTAGAGGGGGAGGTCTATAACGTCACTAACTTCACTGTTACCCGGAACAACGGTATGTTCAGAGCAACCCAACATGACTACAAGCTTTCATTTGGTGCAAATACAAGGATTGTTCCATGCCCAACTATATCTGTTCCAGATAATGGACTGAATCTGGTGAAGACCTCTGCTATAATGAAGACTAAAGGCTCTTCACAATATCTCATAGTTACTGGAATATCAGAGAAGCTGACACTTAACAAACAAGGGAGGCAGACACGTTTAATGTTGATTGATTTGGTTGACGAAATGGGCAAGATCCGTTGTGCTATCTTTGGTCAGCTGATTGACACTGTTAAAGGCTACCTAAGTCTTCCCCGCGACAGTTTGCCCGTCCTAATCATTCAGCTTGCCTGTGTTAATCTATACAGGGGGGAAGTAGGCATTCAAAACCTTATGAATGCATCCAGGTTGTTGTGGAATCCTGAACTTCCAATGGCATTAGAGTTCATGAATGGTCTTGCTGTTCATGAAATAGAAACGGACATGGAAATCTCCCTAATATCAGACAATGCTCGTCCAATTTCAATTAGGGAGCAATTCTTGAGCTCGTACCCCAGGAGACGTGTGGGGGACCTTACCCCATTGCTGGAGGATGGAAGCTATGTATTTCATGGCACCATAACAGAGGTCTTCCAGGAAGATGATTGGTGGTACATGGCATGCTGCTGCATGAGAGCTATTGATTTCAGTCAAGGTTTCCCATACTGTGATGGTTGCAAGCGTGAGGTCTTTGACATCACACCAAGGTACAAGATCAAGGTTCTTGTATCTGATGATTTTGATGCCATTGAACTAATCATGTTTGACTCTGAGTGTTATTTTCTAATTAATATACCTTGCAAGCAACTACTCTCCGATTCTAAGGCTAAGCAGTGTGTTGGGTATCCAGATGAAATCATGGATTTCATTGGCCATGACTTCCTTTTCAGGATTGATGTCAAGGCTGACAGATCTTCCACCTTTGATGATGACTCCATCAAAGTTCAGAAAATCTGCTCAGATCCTTCCATCATCAAAGATTACAAGGAACTCATTGAAGATGAGACTCCTTTAAAGTTTGCTCTTGCATTCTCCAAATATGAAAAGAGTGGTGGAGAAAGTTGTGTGCTTGACCTTACCCCGAACACCCTTACCATTGGTAGCCAAGATGATCTGAACACCCCTGGTTCTGGGCAGTCTTCAGCTGCTCCATCTACAGGAGACACCACCTGCAAGCGTCCTTCTGATGGGAAAGATGATGAACCCTGTGAAAAAAGGAGGAGGGGGAAGGCTAGAGTTATTAAAGTTGAAAAAACATGA 1560 0.4404 MDMVSAGYHKVANLCGRRETWRLRLKLVRQWKMSAVATPDDPFAMHMLFVDQEGNRIEAVIQKHMMHRFNNSALEGEVYNVTNFTVTRNNGMFRATQHDYKLSFGANTRIVPCPTISVPDNGLNLVKTSAIMKTKGSSQYLIVTGISEKLTLNKQGRQTRLMLIDLVDEMGKIRCAIFGQLIDTVKGYLSLPRDSLPVLIIQLACVNLYRGEVGIQNLMNASRLLWNPELPMALEFMNGLAVHEIETDMEISLISDNARPISIREQFLSSYPRRRVGDLTPLLEDGSYVFHGTITEVFQEDDWWYMACCCMRAIDFSQGFPYCDGCKREVFDITPRYKIKVLVSDDFDAIELIMFDSECYFLINIPCKQLLSDSKAKQCVGYPDEIMDFIGHDFLFRIDVKADRSSTFDDDSIKVQKICSDPSIIKDYKELIEDETPLKFALAFSKYEKSGGESCVLDLTPNTLTIGSQDDLNTPGSGQSSAAPSTGDTTCKRPSDGKDDEPCEKRRRGKARVIKVEKT. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06762 519 CDD RPA1_DBD_C 292 435 IPR047192 -
Seca3g06762 519 Gene3D - 277 434 IPR012340 -
Seca3g06762 519 SUPERFAMILY Nucleic acid-binding proteins 285 419 IPR012340 -
Seca3g06762 519 SUPERFAMILY Nucleic acid-binding proteins 142 240 IPR012340 -
Seca3g06762 519 MobiDBLite consensus disorder prediction 492 519 - -
Seca3g06762 519 Gene3D - 7 113 IPR012340 -
Seca3g06762 519 Gene3D - 116 247 IPR012340 -
Seca3g06762 519 Pfam Domain of unknown function DUF223 47 135 IPR003871 -
Seca3g06762 519 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Seca3g06762 519 MobiDBLite consensus disorder prediction 467 519 - -
Seca3g06762 519 Pfam Replication factor-A C terminal domain 291 412 IPR013955 -
Seca3g06762 519 MobiDBLite consensus disorder prediction 467 491 - -
Seca3g06762 519 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06762 Seca-Chr3 151922770 151926118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06762 9 400 Core DNA Replication Machinery Family AT5G08020 20.048 9.30e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06762 - - lja:Lj6g3v0884310.1 331.643