Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06717 ATGTCTACCCATACAAAGACTACCAATCAAGGCACAGGGAGTGGCACTAGCTCCCGAAGTGACAGTTTAAAGAGCACCAGTGCACCCATTAGGCCACATACTGATGGTAATGTAAGGTGGGATGCAATTAACATGGTTTCCAAGAGTGGCCCTCACAATCTTAGCCATTTCAGGCTTCTCAAACGCATTGGTTATGGAGACATTGGAAGTGTGTATCTTGTGGAACTAAGAGGAACTAATGCCCACTTTGCCATGAAAGTAATGGACAAGGAAGCTCTTATAAGCAGAAATAAGCTTCTGCGAGCACACACAGAAAGGGAGATTCTTGGACTTCTTGATCACCCCTTCTTGCCAACTTCATATTCTTACTTTGAAACTGATAAGTTTTACTTTTTGGTCATGGAGTTCTGTAGTGGGGGTGATCTTCATTCTGTTCGACAAAAGCAACCAAACAAGTGTTTCCCTGAAGAAGCTGTAAGGTTTTATGCTTCAGAGGTTTTGTTGGCTCTTGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAGAGATGAAGGGCATATCATGCTCTCAGATTTTGATTTATCACTTCGCTGCTCTATCAGTCCTACATTAGTCACCTACCAATGCAGGCAATGGTGGTGGTGGTGA 675 0.4326 MSTHTKTTNQGTGSGTSSRSDSLKSTSAPIRPHTDGNVRWDAINMVSKSGPHNLSHFRLLKRIGYGDIGSVYLVELRGTNAHFAMKVMDKEALISRNKLLRAHTEREILGLLDHPFLPTSYSYFETDKFYFLVMEFCSGGDLHSVRQKQPNKCFPEEAVRFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSISPTLVTYQCRQWWWW. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06717 224 Gene3D Phosphorylase Kinase; domain 1 55 140 - -
Seca3g06717 224 Gene3D Transferase(Phosphotransferase) domain 1 141 208 - -
Seca3g06717 224 Pfam Protein kinase domain 58 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06717 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Seca3g06717 224 SUPERFAMILY Protein kinase-like (PK-like) 41 218 IPR011009 -
Seca3g06717 224 ProSiteProfiles Protein kinase domain profile. 57 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06717 224 FunFam Serine/threonine-protein kinase D6PK-like 55 140 - -
Seca3g06717 224 SMART serkin_6 57 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06717 224 FunFam serine/threonine-protein kinase D6PK-like 141 208 - -
Seca3g06717 224 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g06717 224 PANTHER FLIPPASE KINASE 1-RELATED 13 218 - -
Seca3g06717 224 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06717 Seca-Chr3 151177321 151178313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06717 14 214 AGC Kinase Gene Family AT3G12690 76.355 6.17e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g06717 Pkinase 4.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06717 - - gmx:100819001 358.607