Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06715 ATGATGGCAGGCAGTGGACAACTAACAGTTCCTCCAGGCTTCAGATTCCACCCTACTGATGAGGAACTTCTTTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAATGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACTCGAACAAATCGAGCAACCACAGCTGGTTTTTGGAAAGCAACTGGAAGGGATAAGGCCATATACAACACCAATTCTAAGAGGATTGGGATGAGAAAAACCCTAGTGTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGATGCAGAGGTTCAGCAGGAAGATGGGTGGGTGGTTTGCCGGGTCTTCAAAAAGAAAAACCAAAATAGAGGTTTCCAACAAGAAATTGAGGAAGAAGAGCACTTAACCCACATGAGATCAACCAGTGGTCCTTGCCACCAGATTCTAGAGCCAAAACATCATCACATGCAAGGACTATATGATTGCACCTTTGATGGGGCAATTCACCTTCCACAATTGTTCAGTCCAGAATCAGCTGTAGCACCCACTTCCTCCATGAACGCCATGGACATCCTTGAATGCTCTCAAAACCTGTTGAGGCTCACAACAACTCCTGGATGTGGACTTAACCTTATGCAACAACATGGAGAGAGGTTCAATGGTGACTGGTCATTCTTGGATAAGCTACTAGCATCCCACCATGGCATGGATCATCCACAAACCAAATGTAATAACCCTCATACTCAACAACATGCTCCAGCTGCAAATGTTGTGGGAACTTCTGCTCAGAAATTTCAATTTCATTACCTTGGTTGTGAGCCCCATGATATCATGAAATTTTCCAAGTAA 975 0.44 MMAGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYNTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQQEDGWVVCRVFKKKNQNRGFQQEIEEEEHLTHMRSTSGPCHQILEPKHHHMQGLYDCTFDGAIHLPQLFSPESAVAPTSSMNAMDILECSQNLLRLTTTPGCGLNLMQQHGERFNGDWSFLDKLLASHHGMDHPQTKCNNPHTQQHAPAANVVGTSAQKFQFHYLGCEPHDIMKFSK. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06715 324 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Seca3g06715 324 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Seca3g06715 324 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Seca3g06715 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 246 - -
Seca3g06715 324 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Seca3g06715 324 FunFam NAC domain-containing protein 19 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06715 Seca-Chr3 151118064 151121889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06715 2 324 NAC Transcription Factor Family AT1G79580 52.910 2.36e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g06715 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06715 - - vun:114178728 565.844