Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06696 ATGAAGCACTACGATGAATTTGTAGAAGAAATGACTAAGATAGAAGCTGCAGTAGTTCCTGGATATCCCACCTCTTCTTTCTGCATGGAGATGGTTGTCATGCAGGATCATGATGGATGCAAAAAGAGTCCTATAACTGCCAAGGGTTTTGATCACGAGAGGAAGAAAGTGGTTCCTTGGACAAAAGAGGAGCATGAACGCTTTCTGATGGGACTTCAGAACTATGGCAAAGAGCATTGGAAAAATATCGCTCGCTATTCTGTAATCACAAAGACGCCTACCCAAGTGGTAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCTGGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATTATATCACCACTGATAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTATTTTGTTCAGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTAAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCAACAAAATGCTCAAGGTTTCGGAACCACTTCTAATGACTTCAATAAGGACGTTGTTTTTGGTTTTTGGTTTTTGGTGACCATTGTTATACTAGTTCTCCTGCATGGTTACAGTAGATTACCTTAG 714 0.3992 MKHYDEFVEEMTKIEAAVVPGYPTSSFCMEMVVMQDHDGCKKSPITAKGFDHERKKVVPWTKEEHERFLMGLQNYGKEHWKNIARYSVITKTPTQVVSHAQKYFLRQKLSGGKDNKRRSSIHYITTDNLTEPTTNSGQDKPILFRLITTMWSHSWRFFNPNYDEMFMFPSSDIYSETLKFQGKQDLDKCLFHHAYAQQNAQGFGTTSNDFNKDVVFGFWFLVTIVILVLLHGYSRLP. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06696 237 ProSiteProfiles SANT domain profile. 60 108 IPR017884 -
Seca3g06696 237 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 169 IPR043363 -
Seca3g06696 237 SMART sant 56 106 IPR001005 -
Seca3g06696 237 ProSiteProfiles Myb-like domain profile. 52 104 IPR001005 -
Seca3g06696 237 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 107 IPR006447 GO:0003677
Seca3g06696 237 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Seca3g06696 237 CDD SANT 59 104 IPR001005 -
Seca3g06696 237 Gene3D - 58 109 - -
Seca3g06696 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 108 IPR017930 -
Seca3g06696 237 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06696 Seca-Chr3 150562408 150569669 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g06696 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06696 - - gmx:100783469 221.476