Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06688 ATGGCCGCCGCCACCGCCACCGCAGCACCCGCCGCTCCGACGCGCCAGCTGTCGCAGAAGGAGGTGGACATCCAGATGATGTTGGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGATATGTCTTCAAGCGCCGCACTGATGGTATTTACATAATTAACCTTGGGAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATCGTTGCCATTGAGAACCCTCAGGATATCATTGTTCAGTCGGCCAGGCCTTATGGTCAGAGAGCAGTTCTAAAGTTTGCTCAATACACTGGCGCTCATGCAATAGCAGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCCTACAACGAGCCACGCCTTCTCATTCTAACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGAGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCTAATAACAAGGGAAAACATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGGCACAAGTGGGACGTAATGGTGGATTTATTCTTCTACAGAGAACCTGAGGAAACCAAGCCACAAGAGGAAGATGAAGCACCAGCTGCTCAAGATTTTGCCATTTCAGACTTCAATGCTGCTGGTATTGCCAGCTTCCCTGCTGATGGCCAATGGCCTGCTGCTGCACTTGAACAACCCTGGACTGAAGAAGTTCCACAACCAATCCCAGCAGCTCCTGGTAACTGGGCCCCGGAAGCTGGAGATTGGGGTGAGTCTGTTCCAGCTCCACAAGCTGTGCCTGCAACTCCAGCTGTTCCTGCAACTCCAGCTGTTCCTGCCCCCAGCTGGGATTAG 936 0.5075 MAAATATAAPAAPTRQLSQKEVDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKPQEEDEAPAAQDFAISDFNAAGIASFPADGQWPAAALEQPWTEEVPQPIPAAPGNWAPEAGDWGESVPAPQAVPATPAVPATPAVPAPSWD. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06688 311 Pfam Ribosomal protein S2 27 122 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 SUPERFAMILY Ribosomal protein S2 19 209 IPR023591 -
Seca3g06688 311 MobiDBLite consensus disorder prediction 293 311 - -
Seca3g06688 311 FunFam 40S ribosomal protein SA 23 229 - -
Seca3g06688 311 NCBIfam 30S ribosomal protein S2 19 215 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca3g06688 311 Hamap 40S ribosomal protein SA [rps-0]. 11 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Seca3g06688 311 MobiDBLite consensus disorder prediction 257 311 - -
Seca3g06688 311 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 PRINTS Ribosomal protein S2 signature 103 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 PRINTS Ribosomal protein S2 signature 166 180 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 PRINTS Ribosomal protein S2 signature 54 63 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 PRINTS Ribosomal protein S2 signature 24 42 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 ProSitePatterns Ribosomal protein S2 signature 2. 128 152 IPR018130 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 Gene3D - 23 229 - -
Seca3g06688 311 CDD RPS2 27 193 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca3g06688 311 PANTHER 40S RIBOSOMAL PROTEIN SA 14 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06688 Seca-Chr3 150360220 150362908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06688 11 289 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.954 1.10e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06688 K02998 - gmx:100786575 522.316