Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06640 ATGTCGAATCATCCGGCGCTTCCGCGGCTCCCCGCCGTGACAGCGCGTTGCGTCGGTTGCCGTACATACCTGTCTGCGGCGCCGGGGGTGATGGAGCTGCCTTGCCCTAACTGTCAAATGCGGCAAACTTTCCCCAGCGCCGTCGATCCCTCCGCTGCGCGGCTTCGCTGCTTCACCTGCAAGGCACTTGTCAGCGTGCCTCTTGGCCTCGCGAGTTTCCCTTGCCCGCAGTGCAAGGTTAAGCTCGACGTCCATGTTGACGATGAAGACGTCAATGAGCTAGTTGTTGAAGTGGAGCGGGTTGAAGATGATGATGGTGGTATGGCTGGGGAAACATTTACAGATTATCGGCCAGCAAAGGTGTCTATTGGGCCTCCTCACCCAGATCCGGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCGCCTGAGCCTACTTATGATCCAAAGATTAAAGATGATCTGGAAAGTTCAAATGCTTTGTCATGCTTGCAGATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACACCTTCCAGATGGTACTAGGGCCGGATTCTTTATTGGAGATGGAGCTGGAGTAGGTAAAGGGCGAACAATTGCAGGGATAATTTGGGAGAACTGGCGTCATGGGAGGAGAAAAGCCTTGTGGATTTCTGTTGGTTCAGATTTGAAGTTTGATGCCAGAAGAGACCTAGAAGATATGGGTGCAACTTGCATTGAAGTGCATGCTTTGAACAAGCTTCCTTATTCTAAGCTTGAATCAAAGTCTGTTGGGGTAAGGGAGGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCTTCTGAGAAAGGTCGTACTCGTCTCCAACAGCTTGTGCAGTGGTGTGGATCAGGGTTTGATGGCCTTATCATTTTTGATGAGTGCCATAAAGCAAAAAATTTGGTCCCTGAACATGGTAAGAAGCCAACACGAACTGGTGAAGCAGTACTTGATATCCAGGCTCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAATCTCGCAATATGGCTTATATGGTTCGACTTGGCCTTTGGGGAACTGGGACTTCTTTCTGTGATTTTGGTGCATTTTTAGGTGCTCTTGAAAAAGGAGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACATGAAAGCAAGGGGGATGTATTTATGCCGTACACTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGAAGCACCATTAGAAGATGAAATGTTGGATATGTATAAAAAGGCTGCAGAATTTTGGCTAGAATTGCATGAGAAATTGCTGTCTGCCATTGCCTTTCTAAATGAGAAACCTAATTGTAGACGACTATGGAGTTTATACTGGGCAAGCCACCAGCGCTTCTTTAGACACTTGTGTATGTCTGCTAAAGTCCCTACTGCGGTCAGACTAGTGAAGCAAGCATTAATGGAGGATAAGTGTGTAGTCATAGGTCTGCAGAGTACTGGTGAAGCAAGAACAGAGGAAGCTGTTTCAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGTGAATTGCTGCTAAAATTTGTTGAAGAAAATTATCCATTGCCAGAAAAGCCTGAACATCTCCCAGAAGAGGATGGTGTGAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGATGTTTCAGTAAAAGGAAGAGACAGAAAAGTAGCTAAGTTGCAGCCTCCTAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGCTTCTGCTCTTGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGTGCTGCCTCTGCTCTTGAATCTACTGACTCTGATTATGATGAGTTTCAGACATGTGAAATTTGCAGTACCGAAGAGGAAAATGAAAACTTGTTGCAATGCTCTTGCTGTGGTAAATCATTCCATCAATCATGCTTGGTTCCCCAAATTGGCAATTTAGTTCCCAAAGAATGGTCGTGTCATTTGTGCAACGAAAAAACAGATGAATTTCTCCATGGAAGACATGCATACATAACTGAAATCCAAAAGAGGTATGACACGGCCTTTGAGTGCAAGACAAAAATATTAGAGATGATTCATGCTTTGGATCTTCCAAATAATCCATTGGATGATATTATTGACCAGTTAGGAGGCCCTGACAAAGTTGCGGAAATAACAGGAAGGAAAGGGATGCTTATGAGGGCCCCTAGTGGAAAGGGTGTGACTTATCGGGCTCGTAATATAAAAGATGTCCCTATGGAAATGGTCAACATGCATGAAAAGCAGCTCTTTATGGATGCAAAGAAGTTAGTAGCGATTATCTCTGAAGCTGGATCAGCTGGTGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTTGAACTTCCTTGGAGTGCGGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGGTCAAATCAAGCTTCAGCACCAGAATACAGGTTTCTATTTACTAACCTTGGCGGAGAACGCCGATTCGCATCAGTTGTTGCGAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTCCTTTTGGAAGGAGGGCTCTGATGATTCTGTACAGAGGAATAATGGAGCAGGATTCTCTTCCCATTGTACCTCCAGGATGCTTATCTGACAGACCAGATACAACCCAAGGTTTTATTATGCAGGCAAAATCTGCTCTTGCATCTGTTGGAATTGTTAGGGACACCATTCTTGGAGATGATGGAGATCCTGGAAGGTTATCTGGTCACATTACTGATTCAGATATGTATGATATTGGGCGATTCCTCAACCGGCTTTTGGGACTAACTCCTGAAACTCAAAATGGGCTATTTGAGTTATTTGGGAATATCTTGGATCTTCTTATTCAAAATGCTCGCATTGAAGGTAACCTTGACACAGGCATTGTTGACTTGAAAGCTAATGCCATTGAACTGAAAGGGACTCCAAAGACAGTCCATGTTGATCAAATGAGTGGGGCTTCAACTGTTCTGTTCACATTCATCTTGGATCGTGGGACCTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAAAAGGATGGGCTTGGTTCATCCAATGATGGTTTCTACAAGTCCAAGAGGGAATGGCTGGGAAGACGTCGTTTCATTTTGGCACTTGAAAGTTCTGCTTCAGCTATGTGTAAAATAGTTCGTCCCGCTGGAGAATCACATCGGGAGATGCACCTGGATGAATTAAAAAGTAAATATACAAAAGTTTCATCATCAGACAAGGTTCAAACTGGTTGGGAAGATGAATATGTTGCTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAGCATTGGCACCTCCTGTACAGTTGGTTTAAGACTACGGGAAGTAAATGTCTTGGGTGGCGTCATTCTTCCTGTTTGGGGAACCATAGAAACTGCCCTTTCTAAACAGGCCCATCTAATCAATAGGAGGTTACGTGTTGTTCGTGTAGAAACTACATCAGATAACCCACATGTAGTCGGGCTTCTTGTTCCTAATGCAGCAGTTAAAACTGTGCTTCAAGGTTTAGCATGGGTTCAGGAAGTTCATGATTGA 3672 0.4447 MSNHPALPRLPAVTARCVGCRTYLSAAPGVMELPCPNCQMRQTFPSAVDPSAARLRCFTCKALVSVPLGLASFPCPQCKVKLDVHVDDEDVNELVVEVERVEDDDGGMAGETFTDYRPAKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSNALSCLQIETLVYACQRHLQHLPDGTRAGFFIGDGAGVGKGRTIAGIIWENWRHGRRKALWISVGSDLKFDARRDLEDMGATCIEVHALNKLPYSKLESKSVGVREGVIFLTYSSLIASSEKGRTRLQQLVQWCGSGFDGLIIFDECHKAKNLVPEHGKKPTRTGEAVLDIQARLPEARVVYCSATGASESRNMAYMVRLGLWGTGTSFCDFGAFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIIEAPLEDEMLDMYKKAAEFWLELHEKLLSAIAFLNEKPNCRRLWSLYWASHQRFFRHLCMSAKVPTAVRLVKQALMEDKCVVIGLQSTGEARTEEAVSKYGSELDDFVSGPRELLLKFVEENYPLPEKPEHLPEEDGVKELQRKRHLASPDVSVKGRDRKVAKLQPPSDVESDEESETASALESSDSDYGPEGDESAASALESTDSDYDEFQTCEICSTEEENENLLQCSCCGKSFHQSCLVPQIGNLVPKEWSCHLCNEKTDEFLHGRHAYITEIQKRYDTAFECKTKILEMIHALDLPNNPLDDIIDQLGGPDKVAEITGRKGMLMRAPSGKGVTYRARNIKDVPMEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRFLFTNLGGERRFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSPFGRRALMILYRGIMEQDSLPIVPPGCLSDRPDTTQGFIMQAKSALASVGIVRDTILGDDGDPGRLSGHITDSDMYDIGRFLNRLLGLTPETQNGLFELFGNILDLLIQNARIEGNLDTGIVDLKANAIELKGTPKTVHVDQMSGASTVLFTFILDRGTSWELANTMLNEKQKDGLGSSNDGFYKSKREWLGRRRFILALESSASAMCKIVRPAGESHREMHLDELKSKYTKVSSSDKVQTGWEDEYVASSKQCMHGPNCSIGTSCTVGLRLREVNVLGGVILPVWGTIETALSKQAHLINRRLRVVRVETTSDNPHVVGLLVPNAAVKTVLQGLAWVQEVHD. 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06640 1223 SMART PHD_3 625 671 IPR001965 -
Seca3g06640 1223 MobiDBLite consensus disorder prediction 538 617 - -
Seca3g06640 1223 Gene3D - 157 358 IPR027417 -
Seca3g06640 1223 Pfam P-loop containing NTP hydrolase pore-1 126 426 IPR039187 -
Seca3g06640 1223 Pfam C-terminal domain on Strawberry notch homologue 714 1003 IPR026937 -
Seca3g06640 1223 FunFam Protein strawberry notch homolog 2 157 357 - -
Seca3g06640 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 874 IPR027417 -
Seca3g06640 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 369 IPR027417 -
Seca3g06640 1223 PANTHER STRAWBERRY NOTCH-RELATED 16 1219 IPR026741 GO:0006355
Seca3g06640 1223 Pfam PHD-finger 626 672 IPR019787 -
Seca3g06640 1223 MobiDBLite consensus disorder prediction 538 582 - -
Seca3g06640 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 681 IPR013083 -
Seca3g06640 1223 SUPERFAMILY FYVE/PHD zinc finger 615 675 IPR011011 -
Seca3g06640 1223 ProSitePatterns Zinc finger PHD-type signature. 626 670 IPR019786 -
Seca3g06640 1223 ProSiteProfiles Zinc finger PHD-type profile. 623 673 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06640 Seca-Chr3 148579862 148601582 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g06640 AAA_34 4.3e-134 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06640 K26273 - gmx:100808670 1856.65