Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06639 ATGACAGATGAATTGCGATCACAAGGCATGTTTGGGAAACAAGAGGATGGTGGAAGAGAGGCTCAAATAGAAGAGGGTTGTATAAATAGAGAGTTTTATCATTTTTTTGATCTAAGAGGCTTAGATATCTTATTTAAATCGGGTAAATGGACTGTAGCAGGGAAAGAAAGTAAGGGTGATGATGGTGGGTCTGACAAGATGAGAGAGAAAGGAGAAGGACCAAATGGTCATGGACTTAGTGGAAGAAACAAAATAAGGAAGCAACTCATAGATGCAGGTTGGATAGTTGGGTGCTTATTCACATACCAAAACGACTATAATCAAGAAGTGTATGTTAATCTTGATGGAAGCAAGGCTTTCACATCTATTATAAAGGCTTACCATACACTTCGGAAGCACTATAGAGATGGTAACGGTGAAGGTAAGTTTTACGAACAAGGTTTCCAGCTCAGACCAATATGTGAAATGGCTATCAATATTTCAAGGGAAAAAGAAAGCATAAATGAAGGAGAATTCGAGCATATAGGGGAAAAGGATGCAAATACAGCAGATGGAGTGAATAAGAAAGTTCAAAAAGAAACATTAGGGTCTGGTACAACAGATTTCCCAGGTAATAAGCAAAAGAAGGGGAAAACTAGAAGGAAATGGCCACTTGTTGAGGAGAGAGAAGATGATGGCACAACACCCTATAAAGTGTCAAATCAGAAGCAAAAGAACACAAAAACTAAGAGGCGACGTCAAGTTCCATTAGTTTATAATTATGAGATAGATTCAGATGCAAGCTCAGAAGAGGATCTGTATGAACCATACAAAGGGAAACGGACTGTGTTTTCCTGGATGATTGATTTGGGAACATTCCAAGAGAATTCAAAGGTTTATTATTTGAAAAACCAAAGGAAAACTGCAGTGGGAAAGATCACTAGAGATGGCATTCATTGCAATTGTTGTAATGAAATCATGTCAATTTCTGAATTTGAAGCTCATTCAGGAAACACAGTCTCTAATCCTCTTAAAAATATATATATAGATAAAGGGACTTCTCTTTTTCAATGCATGCTCGAGTCATGGAACAAACTAGATATATCTAAACGAGAATATTTTCATGCCATTGAGAATATGAGTGATGACCCAAACGATGAGTTATGTCTGATTTGTGGATATGGTGGACGTCTAATATGTTGTGAAAGTTGCCCAACAGCTTTCCATGAAAGTTGTTTGGATACAAACATGCTTCCATCCGGTGTCTGGCTGTGTACTTATTGTCGTTGCAAATTTTGTGGATTGTTTGATCACAAATCTTGTGCTGAAACAAACATCGTTGATTTCAAAGATGCATTCTTATGTGGAAATAGATCGTGTCAAGAGTTGTCTGAGAGACTTGAAATGCTACTTGGATTTAAACATGAAATGGAAGATGGATTTTCTTGGAGTTTCATTCGTCGGTCAGGTATCGACTACCATGAAATTCAAATAAAGCCTCAGGTGGTTGAATGGAATTCCAAGTTGGCTATTGCACTATCAATATTCGATGAGTGTTTCGAGCCTTCTATCGATTATAAATGCAAGATAAATATGATGCAAAGTATGATATACGGTTGTGGGTCAAACTTTGCTCGTGTGGATTGTAAGGGATTTTTTACTGCAATACTTGAGAAAGGTGATGAGATGATATCTGTTGCAACTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTGTTGGGACCCGTGAAATGTATAGGAAACAAGGAATGTGTCTTCGTCTTCTAAATGCCATTGAAATGGGACTCAGCTTTCTAAATGTGGAATTATTGGTCATACCAGCTTACGCTTCAACTGTAGAAACTTGGACTTCTGGTTTAGGATTTGAGCCACTTGAATCAGAAAGCAAAGAAATAATGAAGAACTAG 1914 0.3772 MTDELRSQGMFGKQEDGGREAQIEEGCINREFYHFFDLRGLDILFKSGKWTVAGKESKGDDGGSDKMREKGEGPNGHGLSGRNKIRKQLIDAGWIVGCLFTYQNDYNQEVYVNLDGSKAFTSIIKAYHTLRKHYRDGNGEGKFYEQGFQLRPICEMAINISREKESINEGEFEHIGEKDANTADGVNKKVQKETLGSGTTDFPGNKQKKGKTRRKWPLVEEREDDGTTPYKVSNQKQKNTKTKRRRQVPLVYNYEIDSDASSEEDLYEPYKGKRTVFSWMIDLGTFQENSKVYYLKNQRKTAVGKITRDGIHCNCCNEIMSISEFEAHSGNTVSNPLKNIYIDKGTSLFQCMLESWNKLDISKREYFHAIENMSDDPNDELCLICGYGGRLICCESCPTAFHESCLDTNMLPSGVWLCTYCRCKFCGLFDHKSCAETNIVDFKDAFLCGNRSCQELSERLEMLLGFKHEMEDGFSWSFIRRSGIDYHEIQIKPQVVEWNSKLAIALSIFDECFEPSIDYKCKINMMQSMIYGCGSNFARVDCKGFFTAILEKGDEMISVATIRIHGNQLAEMPFVGTREMYRKQGMCLRLLNAIEMGLSFLNVELLVIPAYASTVETWTSGLGFEPLESESKEIMKN. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06639 637 MobiDBLite consensus disorder prediction 192 244 - -
Seca3g06639 637 MobiDBLite consensus disorder prediction 214 229 - -
Seca3g06639 637 PANTHER PHD FINGER PROTEIN 12 79 636 IPR042163 GO:0003714|GO:0045892
Seca3g06639 637 Pfam Tify domain binding domain 304 354 IPR032308 -
Seca3g06639 637 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g06639 637 MobiDBLite consensus disorder prediction 54 82 - -
Seca3g06639 637 ProSitePatterns Zinc finger PHD-type signature. 382 421 IPR019786 -
Seca3g06639 637 SMART PHD_3 381 422 IPR001965 -
Seca3g06639 637 ProSiteProfiles Zinc finger PHD-type profile. 379 424 IPR019787 -
Seca3g06639 637 MobiDBLite consensus disorder prediction 54 75 - -
Seca3g06639 637 SUPERFAMILY FYVE/PHD zinc finger 375 427 IPR011011 -
Seca3g06639 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 469 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06639 Seca-Chr3 148373921 148379227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06639 82 637 PHD Transcription Factor Family AT4G14920 37.375 1.64e-124 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06639 - - lang:109346644 572.007