Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06629 ATGGCTCCAATGACTCTCCCACCTGGATTTAGGTTCCACCCGACAGATGAAGAGCTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTGCCAGATAAATCATTCTTGCCTAGCAAAGACATGGAGTGGTATTTTTACAGTCCAAGAGACAGAAAGTACCCAAATGGATCAAGAACTAACAGAGCAACAAGAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTGCATTCTCAAAAGAGAGCAGTTGGAATGAAGAAAACATTGGTATATTATAGAGGAAGAGCACCTCATGGGATTAGAACCAACTGGGTTATGCATGAATACCGCCTAATTGAATCATTTCCTGGTGCTGCTCTCTCATCTTTGAAGGATTCCTATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATCCCTGCAGCCAAATCTAAAGAAGAAGAACAAGCAGAGGATATTGCAGCAACAAATAAGAAGCAACCAATGTGGGTCTCAGAAGAACAAGTATTAGGGGAAGACTCAAGTGGCACTGAGATTTCAAGAGAAATGGAAACTGTAGATCATGAGAAAGTTGTTAATCATGAAAATCCTAAATTTCCATGTGATGCTTCATCTTCTGATGTCACTCAAGGAACATGTACCCCAACAGAAACTTGTATAGCAGATGATTTTCAACCACAATTTGCTTGTGATGAAGCAAACAGTAGTGCAGCTAATTATAATTCTTATCCAATGGGAATGGGCTACACTTCAAATCCATTTCAGGATATAGAAATACCTATGTATGCTGGCATGCATTATCAATTCCCACAGACACCTTTGGTGATGGAAGATTTCCCACAAGTAAATTTAATGGAGACAACAAAGTCAATGAAGCCTGAAATAATGACTGATGACTGCATGATATATGACAGATACAGGGACTGTTTGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTCATCTCAAGACCACTCTGTTGCTAATTTTCCAATGCTAGAATGA 1074 0.3901 MAPMTLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVHSQKRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESFPGAALSSLKDSYSLCRIFKKTIQIPAAKSKEEEQAEDIAATNKKQPMWVSEEQVLGEDSSGTEISREMETVDHEKVVNHENPKFPCDASSSDVTQGTCTPTETCIADDFQPQFACDEANSSAANYNSYPMGMGYTSNPFQDIEIPMYAGMHYQFPQTPLVMEDFPQVNLMETTKSMKPEIMTDDCMIYDRYRDCLNGTLEEIISLCSSQDHSVANFPMLE. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06629 357 FunFam Nac domain-containing protein 86 15 160 - -
Seca3g06629 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 220 - -
Seca3g06629 357 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Seca3g06629 357 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Seca3g06629 357 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Seca3g06629 357 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06629 Seca-Chr3 148011720 148015270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06629 1 354 NAC Transcription Factor Family AT1G54330 49.859 1.00e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g06629 NAM 6.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06629 - - gmx:100808325 610.142