Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06622 ATGGAGAGAATGTTCCCTCCGAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGTGACTCGGGTCTCGTTCTCACCACTGACCCAAAGCCTCGTCTTCGTTGGACCGTTGAGCTTCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAGCCCCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGCTTTAGAGCTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGACTTCATGAACAACTTGAGGTTCAAAAACACCTTCAGCTAAGGATTGAAGCACAAGGGAAATACATGCAAAGCATATTGGAGAAAGCTTATCAAACACTTGCAGGTGAAAACATGGCTACTAATAACTTGAAGAGTACTATTGGACCTCATCATCAATCCATCCCACCTGACATGGGAATCATGAAGGAATTTGGTTCACCTCTTAGTTTTTCCTCTTTTCAAGATCTTGACATTTATGGATCTAGTGGTGACCAACTTGAGCTTCAACACAACATGGAGAAGCAACCACCCCTTGATGGGTTCATGCAAATCAATAATGATAGTTTGTGCCTTGGGAAGAAGAGGGCTAATCCTTATAGTGGGAATGGGAAGAGTCCTTTGATGTGGAGTGATGATCTCAGGCTTCAAGATTTAGGGACAGCATCATCATGCCTTGGACCTCATCATCAAGATCATGGTGAACATCTTGCACCATTGGATAGAGGAAGTGATATGGATCCAATGGCTGAGATTTATGACACAAAGCCTGTGCTTCAAGGGGAAGCTGTTGGAGAAAAGAAGTTTGATCCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGGGCACCTCTTCAGGCAGAGAGGATGAGTCCTATGATCACTACCGGTACCATGGCACAAGGTAGAAGCTCACCATTTGGGTGA 1125 0.4489 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMATNNLKSTIGPHHQSIPPDMGIMKEFGSPLSFSSFQDLDIYGSSGDQLELQHNMEKQPPLDGFMQINNDSLCLGKKRANPYSGNGKSPLMWSDDLRLQDLGTASSCLGPHHQDHGEHLAPLDRGSDMDPMAEIYDTKPVLQGEAVGEKKFDPSMKLERPSPRRAPLQAERMSPMITTGTMAQGRSSPFG. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06622 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Seca3g06622 374 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g06622 374 MobiDBLite consensus disorder prediction 334 374 - -
Seca3g06622 374 MobiDBLite consensus disorder prediction 357 374 - -
Seca3g06622 374 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Seca3g06622 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Seca3g06622 374 FunFam Myb family transcription factor 34 92 - -
Seca3g06622 374 Gene3D - 34 92 - -
Seca3g06622 374 MobiDBLite consensus disorder prediction 334 349 - -
Seca3g06622 374 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Seca3g06622 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 216 IPR044848 GO:0003700
Seca3g06622 374 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06622 Seca-Chr3 147701168 147703628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06622 4 374 G2-like Transcription Factor Family AT1G79430 56.955 1.93e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g06622 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06622 - - gmx:100807793 578.941