Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06584 ATGTGGCCGCCCACAATGGACCATGTGTGGCCGCCCACAATGCCACCTCATCAGCTTGGAAGTGCTTCAATTGTGGGTAGATGTTTGGTTGGGCAATTCGAGCATGGGGTGCTAGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGGATATATGAAAAATTTGCAAATGCATTGCTTGATGCTGTTCAGAATATGAAAGTTGGAAATGGCTTAAGTGAAGGTGTGGTTCAGGGCCCTCTGATCAATGAAGCTGCTGTAAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGATATTAGATTACCTCCCAGGAACACACAATATCCTGTAGTAGATTTTCGATCCATAGGAGACCCTGCCTAG 402 0.4378 MWPPTMDHVWPPTMPPHQLGSASIVGRCLVGQFEHGVLAAKFRNSGQTCVCANRILVQEGIYEKFANALLDAVQNMKVGNGLSEGVVQGPLINEAAVKKVESLIHDATSKDIRLPPRNTQYPVVDFRSIGDPA. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06584 133 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 42 53 IPR016160 GO:0016491
Seca3g06584 133 SUPERFAMILY ALDH-like 33 120 IPR016161 GO:0016491
Seca3g06584 133 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 35 112 - -
Seca3g06584 133 Pfam Aldehyde dehydrogenase family 36 114 IPR015590 GO:0016491
Seca3g06584 133 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 25 121 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06584 Seca-Chr3 146825094 146827965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06584 35 114 Aldehyde Dehydrogenase Gene Family AT1G79440 63.750 1.24e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06584 K17761 - gmx:100793318 138.658