Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06581 ATGGTGGTAGTAGCAGTGAAGGTTGGCAGCGTGAGCATGGCACTCCAATCCTCGAAGCTTCTCTCTCGATCTTCCCGTCTCCTCTCCGCTAAGTTGCAGATGCAGATGCCCCTCATTCGCAAGGCACTCACCTTTGTTTCTTTATCTTTCCAACGCACCATAAGCACAGATGCACGTAGTGTTGCTTCCCAGATTAACAGTAAAGGACTGTTGAGGACTCAGGGCCTTATCGGAGGAAAATGGATCGATGCTTATGATGGGAAAACCATAAAGGTTTATAATCCTGCAACTGGTGAGTCTATAGCAGATGTTGCATGCATGGGTGGAAGAGAGACGAATGATGCGATTTCTTCAGCCTCTGATGCATTTAGATGTACTGGTGTTTCTTTTATATCATCTGGGGCAAATTTGCTGAAGTTATTTGTGTCTGAGATTGCTAGGTTGAACAACAATAACAAGTTTGGTGTAAGAATTGGATAA 480 0.4437 MVVVAVKVGSVSMALQSSKLLSRSSRLLSAKLQMQMPLIRKALTFVSLSFQRTISTDARSVASQINSKGLLRTQGLIGGKWIDAYDGKTIKVYNPATGESIADVACMGGRETNDAISSASDAFRCTGVSFISSGANLLKLFVSEIARLNNNNKFGVRIG. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06581 159 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 148 IPR016162 GO:0016491
Seca3g06581 159 SUPERFAMILY ALDH-like 70 124 IPR016161 GO:0016491
Seca3g06581 159 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 67 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06581 Seca-Chr3 146791821 146793367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06581 52 123 Aldehyde Dehydrogenase Gene Family AT1G79440 70.833 9.10e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06581 K17761 - gmx:100793318 135.191