Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06538 ATGACTGTCGTTATGGATAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATTGTGAGAATGCATTTCATTCTGAGTCTCGTGAATTTGTTCTTGGGGTGGATTCTGAGGCAGATTTTGTTGACCTTAATCCTGAGTTGTTAACTGAGGAAAACGTGAAGAGTTTAAATTTTCCTAATTTGGATGTTGCTTATAAATTTTACAATAATTGGTATGGAAAATTGAAGGGTTTTTCAGCACGAAAGGGCAAAGAACGTAAAAATGGAATGGAAGAAATTATTGAGAAGACCTATCTTTGCCATAGGGAAGGAAAGAGACCAATTAATATGAATGAAAGGACCGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTTGGTTAGATGTACATTCTGGCCGTTGGAACGTGACCAAGTTTTGTGATGCCCATAATCATGAAATGTTGAACCCCAAATACACAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACCACACCTCAAATTTATGGGTCATTTGCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTAAGCACCTACGTGAAAGGGAGGAGAATGAAGGGTCAATGTTTTGGAGGCACACTACTGACTCAGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTCAGTGCCAAGTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATACCGTAAGAACAAATATCATTTTCCTTTGGTAGTGTTTTCTGGCATAAACCACCATAATCAAAGCACAATATTTGCTAGTTGCCTAGTTGCAGATGAAACTGAGGAAACTTATGTTTGGGTTTTGGAACAGTTGATGGTGGCAATGAAAGGCAAGATGCCTTCAGCCGTGATAACAGATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCTAATGCACACCATAGGCTTTGTGCATGGCACCTGTGTCGTAATGTTGCTAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTGTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAATTGTATGAGAAAAAGAGGATGTGGGCCACAACATACATTAGGGGAAATTTCTTTGTCGGGTTTTAG 1353 0.4006 MTVVMDNINENVGENVVGLEEIESEDDCENAFHSESREFVLGVDSEADFVDLNPELLTEENVKSLNFPNLDVAYKFYNNWYGKLKGFSARKGKERKNGMEEIIEKTYLCHREGKRPINMNERTGKKKREAKPETRCLCPAKMKVWLDVHSGRWNVTKFCDAHNHEMLNPKYTGMLPAHRKLSEADILEMNNMRNAGITTPQIYGSFASQSGGYNNVGFRKRDLYNEIGRQRMLQLSDAKGAIKHLREREENEGSMFWRHTTDSEGRLQRLFWCDGQCQVDYKLFGDVLAFDATYRKNKYHFPLVVFSGINHHNQSTIFASCLVADETEETYVWVLEQLMVAMKGKMPSAVITDGDLAMRNAIKRVLPNAHHRLCAWHLCRNVASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKELYEKKRMWATTYIRGNFFVGF. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06538 450 Pfam MULE transposase domain 287 381 IPR018289 -
Seca3g06538 450 PANTHER OS01G0519700 PROTEIN 59 434 - -
Seca3g06538 450 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06538 Seca-Chr3 145335792 145337727 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g06538 MULE 5.8e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06538 - - tpra:123913749 480.33