Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06531 ATGGACTCATCTGGGGGTACAAAAAGGAAGACTAGAGACGTTCATCTGGTGTATGAAAGAAGAAGAAAAGGCACTCGCTCTGGAAAAGGAGTATCAGATCCCAATGAAAACATTTCCTTACATCCAAAATCTTTGGCTAAAACTGATGGCTCACGTGAAATTGGAGATGATGGTAATTACTTTGTATGTGAGCTATGTAATGATGGTGGAGAATTGCTCTGCTGTGAAGCTTGCCCTTGTAGTTATCACCTAGAGTGCCTTAATCTTAAGTCTGTTCCTGAAGAAGAATGGCAATGCCCAAACTGCATTAGTAATGCCGAGCTTTCAAAGCCCATAAAATATTTTAGGAATAACTCCAAAAAGGACATCTCATCTAAGAAAGTAAAAGATGGTTCTTCCTCAACAGGTTCAAAGAGCAAGAAGCGATCAAATTATGCATTTACTAATAATTAG 453 0.3863 MDSSGGTKRKTRDVHLVYERRRKGTRSGKGVSDPNENISLHPKSLAKTDGSREIGDDGNYFVCELCNDGGELLCCEACPCSYHLECLNLKSVPEEEWQCPNCISNAELSKPIKYFRNNSKKDISSKKVKDGSSSTGSKSKKRSNYAFTNN. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06531 150 ProSitePatterns Zinc finger PHD-type signature. 63 102 IPR019786 -
Seca3g06531 150 MobiDBLite consensus disorder prediction 122 136 - -
Seca3g06531 150 SMART PHD_3 62 103 IPR001965 -
Seca3g06531 150 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g06531 150 ProSiteProfiles Zinc finger PHD-type profile. 60 105 IPR019787 -
Seca3g06531 150 PANTHER PHD FINGER PROTEIN 12 50 102 IPR042163 GO:0003714|GO:0045892
Seca3g06531 150 MobiDBLite consensus disorder prediction 1 29 - -
Seca3g06531 150 SUPERFAMILY FYVE/PHD zinc finger 43 103 IPR011011 -
Seca3g06531 150 MobiDBLite consensus disorder prediction 122 150 - -
Seca3g06531 150 Pfam PHD-finger 62 104 IPR019787 -
Seca3g06531 150 MobiDBLite consensus disorder prediction 30 44 - -
Seca3g06531 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06531 Seca-Chr3 145035540 145038378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06531 54 102 PHD Transcription Factor Family AT4G14920 46.939 3.84e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g06531 PHD 2.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06531 - - lja:Lj0g3v0315929.1 151.754