Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06513 ATGGACAAAACAGAGCAGACTCAACAGCAGCAGCAGCAGCATGTGATGGGAGTTGCAGCAGGTGCTAGCCAGATGGCCTATTCTTCTCACTACCAGACTGCTCCCATGGTGTCCTCTGGCACCCCTGCCATAGCGGTTCCTTCCCCAACACAACCTCCAGCTTCCTTCTCTAATTCGGCTCACCAACTTGCATACCAGCAAGCACAGCATTTCCACCATCAACAGCACCAACAGCAACAACAGCAGCTTCAAATGTTCTGGGCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGTCTCCCACTTGCTCGGATAAAAAAAATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCAGTGATATTTGCAAAAGCATGCGAAATGTTCATATTAGAGTTGACTTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACATTACAAAAAAATGATATAGCAGCTGCTATTTCAAGAAATGATGTTTTCGATTTCTTGGTTGATATTATTCCAAGGGATGAGTTGAAAGAAGAGGGACTTGGAATAACAAAGGCTACTATTCCATTAGTGGGTTCTCCAGCTGATATGCCATATTATTATGTCCCACCACAACATCCTGTAGGACCTACAGGTATGATCATGGGAAAGCCAGTTGATCAAGCAGCACTATATTCTACACAGCAGCCACGACCTCCCATGGCTTTCATGCCATGGCCACATACACAACCTCAGCAACAGCAGCCATCGCAACAGCAACAGCAACAAACAGATTCTTGA 807 0.4449 MDKTEQTQQQQQQHVMGVAAGASQMAYSSHYQTAPMVSSGTPAIAVPSPTQPPASFSNSAHQLAYQQAQHFHHQQHQQQQQQLQMFWANQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVGPTGMIMGKPVDQAALYSTQQPRPPMAFMPWPHTQPQQQQPSQQQQQQTDS. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06513 268 Pfam Core histone H2A/H2B/H3/H4 66 167 IPR007125 GO:0003677
Seca3g06513 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 60 263 - -
Seca3g06513 268 SUPERFAMILY Histone-fold 61 176 IPR009072 GO:0046982
Seca3g06513 268 MobiDBLite consensus disorder prediction 235 268 - -
Seca3g06513 268 Gene3D Histone, subunit A 65 182 IPR009072 GO:0046982
Seca3g06513 268 MobiDBLite consensus disorder prediction 249 268 - -
Seca3g06513 268 FunFam Nuclear transcription factor Y subunit gamma 70 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06513 Seca-Chr3 144557659 144560818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06513 83 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 90.000 2.27e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g06513 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06513 K08066 - gmx:100799981 404.445