Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06512 ATGAAGTTCAATCCAAGGGTTTCAAGCAGCCGGCGCAAGAACCGCAAGGCGCATTTCACGGCGCTGTCAAGCGTGTGTCGCGTGCTGATGAGTGCGCCACTCTCCACCGACCTCCGATCGAAGTATAACGTGCTGTTAGTACCGGTTCGGAAGGACGACGAGGTGCAGGTTGTGAGGGGAAACCTACAAGGGCCGCGAAGGAAAGGTGGTGCAGGTAGTGAGGGGAAACCTCCACTCTTCTATTATTATTTTCCTGTTTGA 261 0.5402 MKFNPRVSSSRRKNRKAHFTALSSVCRVLMSAPLSTDLRSKYNVLLVPVRKDDEVQVVRGNLQGPRRKGGAGSEGKPPLFYYYFPV. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06512 86 SUPERFAMILY Translation proteins SH3-like domain 8 64 IPR008991 -
Seca3g06512 86 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 66 IPR005756 GO:0003735|GO:0006412|GO:0015934
Seca3g06512 86 Gene3D - 1 76 IPR014722 -
Seca3g06512 86 NCBIfam 50S ribosomal protein L24 8 65 IPR005756 GO:0003735|GO:0006412|GO:0015934
Seca3g06512 86 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 56 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06512 Seca-Chr3 144543869 144544129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06512 1 64 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 79.688 8.21e-31 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06512 K02898 - gmx:100788996 107.842