Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06510 ATGCAGAAACATCAATACAATTCCATGGAACCTAGAAATGAGGAAATCCATCCTGCATCTCAGTCAGTCCTGCAAGACCATCTGGATGGCATGCATATCAATGCACGGCCTTCTGCCTTTAATATGTCATCAGAAAATAAACCTGTACTTAATTACTCCATACAGACTGGGGAGGAATTTGCTCTTGAGTTTATGAGAGATAGGGTGAATCTCAGGAAACCTTCCTTTCCAAATGTTGTGGGTGATCCCAGTTATTCAACAGGGTATATGGAACTGAAAGGCATTTTAGGCCATCCAGGATCTGACAGTGGGTCAGATATTTCTGTGCTCACAAAGATTGAAAAAGTTCCAAAAGAGTTTGACAGGAGAAACTCTTCTCTACACCAGGACAGAAGTAATTACGGGTCAGCTCGATCAATTCCTAGAACTTCAAGTAATCAAGACAATAACCGAGTCCTGCATAGTATTGCCTCTTCTGGAGCTTCTGACAGCTCATCAATAAAGATGAAGTTTTTATGCAGCTTTGGTGGTAGAATATTACCACGGCCCAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACACGTATTATTAGTATAAGGAAGGACATAAGTTGGCAGGAGCTTATGCAGAAAACATCATCAATTTTCAATGAAGCTCATGTAATAAAGTATCAGCTCCCTGGAGAAGATATTGATGCTCTAGTTTCAGTATCTTCTGATGAGGATGTGCGGAATATGATGGAGGAATGTCATGATCTACAAAGCAGAAGAGGATCACTAAAGCTTAGGATGTTTCTATTCCCTTTAAATGATTTGGATGATACTCAGTTTGGTCTAGGTAGCATTGATGGTGATTCTGAAATCCAGTATGTAGTTGCTATCAATGGCATGGACTCGGGATCAAGAAATAACTCAATCCTTCTTGGTGCAACCAGTTCTACTAATAACATACATGAATTGGATGGACAAAATATTGAGAGGGAGACCAATAAAGTTCTGGTAGAATCATTTGGTGTCAGCAGTTCTTCCATGACTGGCAATGTTAACTCATCAATGACAATTCAGCCTTCACAACCGATGCTACCAACCTCCACAAATGCTTATGAAGCCTATCCATTGTTTTATAATGATCAGATCATTCATCATGGGGGAACTAGTCAATATCCAATACACCATGGTCTTGATCCTTCTAACAACTCTGCTCGCAATCTTGGAGACATTCCAGTTTCTGTGCCTACTCATGGTCTTGTTAACCAAGGAATCATAAATGATGGGCAAGCATCCAGTGAGTTGCAAGTACAAATTTCAGATATGCCTTCAATGCAGGTAAAAAGAAAGGGCGATAATGCCATTCATACAGGCAATGATCCAGTAAAAGTTTTCTCGGAAGCACCATATCCTATTCCTTTGCAGCCATTTGAGGGCAGTTTGCAAGGTAATTTATCGGAGGCCCCAGTTACTGCTGCTGTATCAGAAGGACATCATCCAGCACTGCCATCAAAAAACAAGGGTAAACACCAGCCATCTGAAGATGCCTCTTCATTGGTTACTACTTTGAGTATGAATCCAACACAGACTTCTAAATCTGGTGAAGATGATTTCTATACTGCATCCATGGATGCATTCAGTCATCCTCATGTTGATGCTGAGTCCAATGTAATTGATTTCAGTTGCCTTGAACCACCACCACTTCCTAACAGAGTCTATTATTCGGAGAGAATTCCTAGGGAGCAGGCAGATTTGCTCAACCGATCTACAAAGTCAGATGATGCATATGGTTCTCACTTACTCATGGCAGATTTACTTTCTGATTTCAGCCAGATGAATTCAGTTACAGAATCCAGTGACATGTTGCACAATGGGAATATGTCAAATCTGAACACAGTGTCCAGCTCAGTAACAAAGCCCTTGCATGCAGATAGCCATACCATTGATGATGGATTTGCCCAGCTGCAGAATTACAAACATTTGCCTGATGCAACAAGCCAGGTCAATTCAAAGTTGTCACAGTTTGTGGATCCTGAATTGAAGCAGGTATTATCAGATAACAAAGTTTCTAGAAATGAGGATCAAGTCTATGGTTCTGAAAGTGAAACCAATCGCTCCAAAGATATCAATAACATTCCCCTAGTTGATGAAACCAAGGGCACTGAACATCTTGCATTTCACCGGGTTCCTTCTGTTGAACATAATGAGAATCTAACGTCTAAACTCCCAGACCTCAATTTGGGTGAGGTTCCTACCAAGGAATCCAACAATGATACTAAGGTCCATGCACTGCCTTTTGTTTTAACTGGAAACACAAGCCAAGATGTTTCTCAAGACTTTCCCCAGGATGCTAAATCCAAAACTGCTCAGGGTGACATTCTGATTGACATTGAGGACAGGTTTCCCCGTGATTTCCTTTACGATATATTCTCCAAAGCAACAGTTTCAGAAGATTCCTCAAATGTTGGACCATTACCAACAGATAGAGCAGGTTTGAGCTTAAACGTGGACAATCATGAACCTAAACGTTGGTCATATTTTCAGAAGTTGGCCCAAGAGGGGTATGATAATGTTTCTCTAATTGATCAGGATAATCTTGGTTTTCCATCTTCTGTAAGAAAAGTACAAGAAGGTGATAGTAAATCCCAACAATCTGCTCCTCTACCAGTAGATGGTGTTCCGACTGGACACAAGGAATCCCACGTAAATTTTGGTCAGGAAACTCAGAGAAACTTACCTGTAACAACTAAAACAGAGGCCACTGTTTTCCCCCCAAAATATGACCGTTCCCAAGTTACGGGCAATGAAAATAAAAACGTGGATGGCATATTGGAAAACATTAGACCACAGGATTCTGAATATCAGGATGGCAATAATGAAACAAGGAATTTGGGTTTAGCCCCACAAGATACTAGTTTGGGAGGTTTTGACATCAGTACCCTGCAGCTCATAAAGAATGAAGATCTTGAAGAGTTGAAAGAACTAGGTTCCGGTACCTTTGGGACTGTGTATCATGGAAAATGGCGGGGGTCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGCTTTGCTGGTCGATCTTCAGAACAAGAGAGACTGACTGTAGAGTTCTGGCGGGAAGCTGACATACTTTCCAAGCTTCACCATCCAAATGTGGTGGCATTTTATGGTGTAGTTCAGGATGGGCCAGGAGCAACATTAGCCACTGTTACAGAGTACATGGTAGATGGTTCTCTTAGGCATGTTTTGCTTCGTAAAGATAGGTATCTTGATCGCCGCAAGAGGCTGATAATTGCCATGGATGCAGCTTTCGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAATTTGAAGGATCCTTTACGACCAATATGCAAGGTTGGTGATTTTGGCCTGTCAAAAATTAAGCGAAATACCCTAGTGACTGGTGGTGTGCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTGAATGGTAGCAGCAATAAAGTTTCAGAAAAGGTTGATGTGTTCTCTTTTGGTATTGTATTATGGGAGATTCTTACTGGTGACGAGCCATATGCTAACATGCACTATGGTGCAATCATAGGTGAGGCCCTCTTCTCTTTTCTTTGA 3639 0.4114 MQKHQYNSMEPRNEEIHPASQSVLQDHLDGMHINARPSAFNMSSENKPVLNYSIQTGEEFALEFMRDRVNLRKPSFPNVVGDPSYSTGYMELKGILGHPGSDSGSDISVLTKIEKVPKEFDRRNSSLHQDRSNYGSARSIPRTSSNQDNNRVLHSIASSGASDSSSIKMKFLCSFGGRILPRPSDGKLRYVGGETRIISIRKDISWQELMQKTSSIFNEAHVIKYQLPGEDIDALVSVSSDEDVRNMMEECHDLQSRRGSLKLRMFLFPLNDLDDTQFGLGSIDGDSEIQYVVAINGMDSGSRNNSILLGATSSTNNIHELDGQNIERETNKVLVESFGVSSSSMTGNVNSSMTIQPSQPMLPTSTNAYEAYPLFYNDQIIHHGGTSQYPIHHGLDPSNNSARNLGDIPVSVPTHGLVNQGIINDGQASSELQVQISDMPSMQVKRKGDNAIHTGNDPVKVFSEAPYPIPLQPFEGSLQGNLSEAPVTAAVSEGHHPALPSKNKGKHQPSEDASSLVTTLSMNPTQTSKSGEDDFYTASMDAFSHPHVDAESNVIDFSCLEPPPLPNRVYYSERIPREQADLLNRSTKSDDAYGSHLLMADLLSDFSQMNSVTESSDMLHNGNMSNLNTVSSSVTKPLHADSHTIDDGFAQLQNYKHLPDATSQVNSKLSQFVDPELKQVLSDNKVSRNEDQVYGSESETNRSKDINNIPLVDETKGTEHLAFHRVPSVEHNENLTSKLPDLNLGEVPTKESNNDTKVHALPFVLTGNTSQDVSQDFPQDAKSKTAQGDILIDIEDRFPRDFLYDIFSKATVSEDSSNVGPLPTDRAGLSLNVDNHEPKRWSYFQKLAQEGYDNVSLIDQDNLGFPSSVRKVQEGDSKSQQSAPLPVDGVPTGHKESHVNFGQETQRNLPVTTKTEATVFPPKYDRSQVTGNENKNVDGILENIRPQDSEYQDGNNETRNLGLAPQDTSLGGFDISTLQLIKNEDLEELKELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGDEPYANMHYGAIIGEALFSFL. 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06510 1212 SUPERFAMILY CAD & PB1 domains 184 276 - -
Seca3g06510 1212 Pfam Protein tyrosine and serine/threonine kinase 987 1200 IPR001245 GO:0004672|GO:0006468
Seca3g06510 1212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1111 1123 IPR008271 GO:0004672|GO:0006468
Seca3g06510 1212 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 188 270 - -
Seca3g06510 1212 ProSiteProfiles Protein kinase domain profile. 986 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06510 1212 MobiDBLite consensus disorder prediction 487 515 - -
Seca3g06510 1212 MobiDBLite consensus disorder prediction 867 897 - -
Seca3g06510 1212 CDD PB1_UP2 172 268 - -
Seca3g06510 1212 Gene3D Transferase(Phosphotransferase) domain 1 972 1207 - -
Seca3g06510 1212 MobiDBLite consensus disorder prediction 120 150 - -
Seca3g06510 1212 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 979 1073 - -
Seca3g06510 1212 Pfam PB1 domain 185 269 IPR000270 GO:0005515
Seca3g06510 1212 ProSitePatterns Protein kinases ATP-binding region signature. 992 1017 IPR017441 GO:0005524
Seca3g06510 1212 SMART serkin_6 986 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06510 1212 SMART PB1_new 183 270 IPR000270 GO:0005515
Seca3g06510 1212 CDD STKc_MAP3K-like 992 1204 - -
Seca3g06510 1212 PANTHER SERINE-THREONINE PROTEIN KINASE 213 1203 - -
Seca3g06510 1212 Gene3D - 187 267 - -
Seca3g06510 1212 MobiDBLite consensus disorder prediction 129 150 - -
Seca3g06510 1212 MobiDBLite consensus disorder prediction 867 886 - -
Seca3g06510 1212 SUPERFAMILY Protein kinase-like (PK-like) 978 1201 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06510 Seca-Chr3 144138653 144144582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06510 34 620 MAP Kinase Kinase Kinase AT1G16270 37.715 1.74e-97 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca3g06510 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06510 - - gmx:100799118 1903.26