Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06508 ATGATGGAACAATCAAGATTCCAAAATCCTTCTATCCAATGCAATAGCATGGAAACTAGAAACGAATACCAGCCTGGATCACAGTCAGTAATGCAGCAGCAGGACCCTCTGGATGGCGTTCATACTAGTAGGCGACCACCTGACCTCATTACATCAGAAGTTAAACCTAAACTTAATTACTCCATACAGACGGGTGAGGAGTTTGCTCTTGAATTTATGAGAGATAGGGTGAATCTTAGGAAGCCGGTATTTTCAAATGTCGGTGATTCCAATTATACAACAGGTTATATGGAACTGAAAGGCATTTTAGGCATCAGTAATGCAGGATCTGAAAGTGGATCAGACATTTCAATGCTATCAATGATGGAGAAATATCCAAAAGAGTTAGATAGACATGGAGACAGGAGCAATTATGGGTCAATTCGATCACTACCAAGAACTTCAATGAATCAGGACAGTAGACAATTTTTACATGGGTATGGCTCTGCTGGAAGTTATGATAGCTCATCAATTATGAAGTTTCTTTGCAGCTTTGGTGGTAGAATATTGCCACGTCCATGTGATGGGAAGCTAAGGTATGTTGGAGGCCAAACACGTATTCTTCGTATAAGAAAAGACATATCTTGGCAGGAGCTCATGCAGAAAGCATTGCTAATCTATAATCAAGTTCATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTTTCATCTGACGAGGATTTGCAGAATATGATGGAGGAATATAATCATCTACAAGACAGAGATGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATTAGTGATCTGGAGGATGCTCAGTTTGGTCTCAGCAGCATGGGTGATGATTCTGAGATCCAATATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAACAAACTCAACTCTGATTGGTGTCAGCTTTTCAGCAGCAAATGATATAAATGAATTGGACAGGCAAAATATTGACAGGGAGGCCAATGGAGTTGCTGTAGAATCTACAAGTGTCAGCATTGCTCCCCAGACTAACAATTTTGACCCATCTTTGGCTTCTCAGTTTTCACAACCAGTGCTACCAACTTCCTCAAATTCTTATGAAACTTATCCACATCTTTATGGTGATCAAATGATGCGCCATGGGGAACCTAGTGGTCAATATCTTATTAATCATGGTGGTAATCCTTCTCACAAACATGTTATTGGAGAGACTCTTATTACCATGCCTCCCCATACACTGATTAATCAACCAGGGGTTTTGAACGAAGACCATCTACCGAGCAGATTACAAGTACAAAATTCAGAAATACCAGCAACATTGGTGAGAAAGATAGGTGATAGTTCAGTTCAACAAGGAAATGGCCCAGGGAAAATTTTATCCTCGGAAACACTATCTGCAGCTCCTGCTCAATTGTTTGACGGTTACTTGAAAAATAATTTTCCTGAAACATCAATTGTAGTTACTATGCCAGAAGGCCATTCGTTGCATCCAACAAAAATGGACCAGCTCCAGGATTATGAAGAGGCTTCTTCTACATCAAGCAGTACATTTGGTCCTGCTTATGTTGATTCCCACTCAAACGCAGTTGACTTGAGTTGTCTTCACCCTCCTCCTATTCCTAAAAGAGTTTACTATTCAGAAAGAATTCCTAGGGAGCAATTAGAGTTGCTGAATCGGTCCACAAAGTCAGATGATGCACACGGTTCTCAGTTTCATGTTTCAGATTTACTTTCTGATGCCAACCCACCAGATTCAGTTACAGAATCTGGTGAAAATTGGCATGATGCAAATCTGTCTAATCTAACTGAGGAATTGAGCATCACAGCAAAGCCCTTGCATGCAGATGGCTATGTCATTGATAATGGGGCTGCCAAACATCGCATATACAACCAGTTGCCTGATGCAAGCACTCAGATCAAGTCAAAAATAACTGAGCATGTGAATCCTGAGTTGAAGCAGGTATTACCAGACAGTGAAGGAAGCAAAGATGTGTCAAATAAGGATAATGTTGTTACATTGGAAACGGAAATTTGTTGTAAAGATAACCATAACAGACCTGTACTTGATGAGACAAAAGATAGTAAATCAGACTTTCCTACTTTGCATCAGGTTTCTTCTGCTAATCACCTTGATGATCCAGCATCCAATCTTCCAGATGTTGACTGGGGTGATGCCTCTGTGATAGAATCTAATGGCAATTATAATGTACAAGCACTACCTGTTCCTTTAAATGGGAATACAACTACAAAAGATGATTCTCAAGATTTTCCATCAAATGTTTCCAAACAAGTCCAGGGTGACATTCTTATTGATATTAATGATCGATTCCCCCGTGAACTGCTTACTGATATGTTCTCTAAAGCAATAATAGAAGAAGATCCCTCTAATCTAAATCCATTAGCATCGGATGGAGTGGGCCTAAGCATAAACATGGAAAATCATGAACCTACACGATGGTCATATTTTCAAAAATTGGCTCAAGAAGGGATCGATAACGTGTCTCTTATTGACCAGGATCATCTTGGTTTTTCTCCTGCGATAGGGAAAGTGGTTGGAGACAATGGAGCTCAACATGTTACGCCTGTAACAACTGATGAAGTTTCACTAAACCATGCAGAGTCCCACCTCAATTTTGGTGAAGAAAATCAGAAAGACTTACATGGAAGGATTGAAACAGAAGCCACTGTTCTGAAGTCAAATTATGATCATCCCCAAATGAATGACACTGAGAGTATGCAATTTGATGCTATGATGGAAAATCTAAGAGCACAAGAGTCAGAATATGCGGCGGGGAAGTTTGAAACAAGAAATAACAATCTACCCTCTGTTGATCCTTCTTTAGGAGATTTTGATATGAGTACCTTGCAGGTCATAATGAATGACGATCTTGAAGAGCTAAAGGAACTGGGTTCTGGTACCTTTGGGACTGTGTATCACGGAAAATGGCGAGGAACAGATGTTGCCATTAAAAGAATAAAGAAAATCTGCTTCACTGGTCGATCGTCTGAGCAAGAGAGACTGACTGTTGAATTCTGGCGAGAAGCTGACATTCTTTCCAAGCTTCACCATCCAAATGTGGTGGCGTTTTATGGTGTGGTGCAAGATGGACCAGGAGGAACAATGGCCACTGTTGCAGAGTATATGGTTGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGTTTTCATGACAGGTATCTTGATCGTCGCAAGAGACTAATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAATATTGTTCATTTCGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTATGCGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGCGGGGAACTCTACCTTGGATGGCACCAGAGCTTCTGAATGGCAGCAGCAACAGGGTCTCGGAAAAGGTTGATGTGTTCTCCTTTGGGATAGTATTATGGGAGATTCTTACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTCAATAACACATTAAGGCCAACAATTCCAAATTATTGTGACCCTGAATGGAGAACACTGATGGAGCAATGTTGGGCACCCAATCCTGCAGTTAGGCCATCATTCACAGAAATAGCCAGTCGATTGCGTGTAATGTCTGCAGCAGCTAGCCAAACCAAAACACAGGGTCATAAGGCATCCAAATGA 3771 0.4071 MMEQSRFQNPSIQCNSMETRNEYQPGSQSVMQQQDPLDGVHTSRRPPDLITSEVKPKLNYSIQTGEEFALEFMRDRVNLRKPVFSNVGDSNYTTGYMELKGILGISNAGSESGSDISMLSMMEKYPKELDRHGDRSNYGSIRSLPRTSMNQDSRQFLHGYGSAGSYDSSSIMKFLCSFGGRILPRPCDGKLRYVGGQTRILRIRKDISWQELMQKALLIYNQVHAIKYQLPGEDLDALVSVSSDEDLQNMMEEYNHLQDRDGSQKLRMFLFSISDLEDAQFGLSSMGDDSEIQYVVAVNGMDLGSRTNSTLIGVSFSAANDINELDRQNIDREANGVAVESTSVSIAPQTNNFDPSLASQFSQPVLPTSSNSYETYPHLYGDQMMRHGEPSGQYLINHGGNPSHKHVIGETLITMPPHTLINQPGVLNEDHLPSRLQVQNSEIPATLVRKIGDSSVQQGNGPGKILSSETLSAAPAQLFDGYLKNNFPETSIVVTMPEGHSLHPTKMDQLQDYEEASSTSSSTFGPAYVDSHSNAVDLSCLHPPPIPKRVYYSERIPREQLELLNRSTKSDDAHGSQFHVSDLLSDANPPDSVTESGENWHDANLSNLTEELSITAKPLHADGYVIDNGAAKHRIYNQLPDASTQIKSKITEHVNPELKQVLPDSEGSKDVSNKDNVVTLETEICCKDNHNRPVLDETKDSKSDFPTLHQVSSANHLDDPASNLPDVDWGDASVIESNGNYNVQALPVPLNGNTTTKDDSQDFPSNVSKQVQGDILIDINDRFPRELLTDMFSKAIIEEDPSNLNPLASDGVGLSINMENHEPTRWSYFQKLAQEGIDNVSLIDQDHLGFSPAIGKVVGDNGAQHVTPVTTDEVSLNHAESHLNFGEENQKDLHGRIETEATVLKSNYDHPQMNDTESMQFDAMMENLRAQESEYAAGKFETRNNNLPSVDPSLGDFDMSTLQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVAEYMVDGSLRHVLLRKDSFHDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRVMSAAASQTKTQGHKASK. 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06508 1256 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1058 1254 - -
Seca3g06508 1256 Gene3D - 190 273 - -
Seca3g06508 1256 SMART PB1_new 186 273 IPR000270 GO:0005515
Seca3g06508 1256 PRINTS Tyrosine kinase catalytic domain signature 1093 1111 IPR001245 GO:0004672|GO:0006468
Seca3g06508 1256 PRINTS Tyrosine kinase catalytic domain signature 1164 1186 IPR001245 GO:0004672|GO:0006468
Seca3g06508 1256 PRINTS Tyrosine kinase catalytic domain signature 1052 1065 IPR001245 GO:0004672|GO:0006468
Seca3g06508 1256 PRINTS Tyrosine kinase catalytic domain signature 1208 1230 IPR001245 GO:0004672|GO:0006468
Seca3g06508 1256 Gene3D Phosphorylase Kinase; domain 1 963 1058 - -
Seca3g06508 1256 Pfam PB1 domain 188 271 IPR000270 GO:0005515
Seca3g06508 1256 SMART serkin_6 970 1240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06508 1256 Gene3D Transferase(Phosphotransferase) domain 1 1067 1256 - -
Seca3g06508 1256 CDD STKc_MAP3K-like 976 1237 - -
Seca3g06508 1256 Pfam Protein tyrosine and serine/threonine kinase 971 1237 IPR001245 GO:0004672|GO:0006468
Seca3g06508 1256 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 191 273 - -
Seca3g06508 1256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1099 1111 IPR008271 GO:0004672|GO:0006468
Seca3g06508 1256 CDD PB1_UP2 175 271 - -
Seca3g06508 1256 MobiDBLite consensus disorder prediction 1 49 - -
Seca3g06508 1256 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g06508 1256 ProSiteProfiles Protein kinase domain profile. 970 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06508 1256 PANTHER SERINE-THREONINE PROTEIN KINASE 216 1238 - -
Seca3g06508 1256 ProSitePatterns Protein kinases ATP-binding region signature. 976 1001 IPR017441 GO:0005524
Seca3g06508 1256 SUPERFAMILY Protein kinase-like (PK-like) 959 1236 IPR011009 -
Seca3g06508 1256 SUPERFAMILY CAD & PB1 domains 188 275 - -
Seca3g06508 1256 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 963 1057 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06508 Seca-Chr3 144126158 144134193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06508 52 613 MAP Kinase Kinase Kinase AT1G16270 39.258 1.63e-99 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca3g06508 PK_Tyr_Ser-Thr 9.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06508 - - gmx:100799639 1993.01