Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06502 ATGGCTTCCATGGTTGGTAGAAGGGCTACATATTCAACACATTCTGTATCTACAAATGAGCCAGTTGTTTCTGTGGATTGGCTTTATGATAACCTGAAGGAGCCTGATATGAAGGTCCTGGATGCATCCTGGTACATGCCGGATGAGCAGAGGAATCCAATTCAAGAATATCAGATTGCTCACATTCCGGGGGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGAAATACAAATCTGCCACACATGTTGCCATCAGAGGAAGCTTTTGCTTCTGCTGTTTCTGCTCTTGGCATACAAAACAAAGATGACTTAGTTGTTTATGATGGGAAAGGATTATTTAGTGCAGCTCTGTTTGGGCATGACAGAATTTGGGTATTAGATGGTGGTCTGCCAAGATGGCGTGCATCGGGTTATGATGTTGAATCTAGCGCTTCGAGTGATGCTATTCTTAAAGCCAGTGCTGCAAGTGAGGCAATAGAGAAAGTATATCAGGGACAAGCAGTGAGTTTGGAATCTCATTTTTTTGCTTACCAGGTTGGCCCAATCACATTTCAGACTAAATTTCAGCCACATCTTGTTTGGAGCCTTGATCAGGTAAAGAGAAATATAGAGGATAAAACTCACCAACACGTAGATGCTCGATCAAAGCCCAGATTTGACGGAAATGCTCCAGAGCCACGAAAGGGAATCAGAAGTGGTCATGTACCTGGCAGTAAATGCATTCCTTTTAGCCAGTTGTTAGATGGTTCACAGACACTGTTGCCAGCGGATGAGCTTAAGAAGCGATTTCATCAAGAAGGCATCTCTTTGGAGAGCCCAGTTGTAACTTCATGTGGAACTGGAGTAACTGCTTGCATCCTTGCATTGGGTCTTCATCGTCTTGGAAAGTATGATGTTCCAGTTTATGATGGATCTTGGACTGAATGGGGAGCACAATCTGATACACCTGTTGAAGCTTCACAAATGCAATCAAGCTAG 981 0.4343 MASMVGRRATYSTHSVSTNEPVVSVDWLYDNLKEPDMKVLDASWYMPDEQRNPIQEYQIAHIPGALFFDVDGIADRNTNLPHMLPSEEAFASAVSALGIQNKDDLVVYDGKGLFSAALFGHDRIWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYQGQAVSLESHFFAYQVGPITFQTKFQPHLVWSLDQVKRNIEDKTHQHVDARSKPRFDGNAPEPRKGIRSGHVPGSKCIPFSQLLDGSQTLLPADELKKRFHQEGISLESPVVTSCGTGVTACILALGLHRLGKYDVPVYDGSWTEWGAQSDTPVEASQMQSS. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06502 326 ProSitePatterns Rhodanese C-terminal signature. 300 310 IPR001307 GO:0004792
Seca3g06502 326 ProSiteProfiles Rhodanese domain profile. 33 143 IPR001763 -
Seca3g06502 326 SMART rhod_4 195 316 IPR001763 -
Seca3g06502 326 SMART rhod_4 23 140 IPR001763 -
Seca3g06502 326 MobiDBLite consensus disorder prediction 208 228 - -
Seca3g06502 326 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 20 145 IPR036873 -
Seca3g06502 326 Pfam Rhodanese-like domain 197 312 IPR001763 -
Seca3g06502 326 Pfam Rhodanese-like domain 24 136 IPR001763 -
Seca3g06502 326 FunFam Sulfurtransferase 15 150 - -
Seca3g06502 326 Gene3D - 190 324 IPR036873 -
Seca3g06502 326 ProSiteProfiles Rhodanese domain profile. 205 319 IPR001763 -
Seca3g06502 326 FunFam Sulfurtransferase 190 321 - -
Seca3g06502 326 Gene3D - 15 150 IPR036873 -
Seca3g06502 326 CDD TST_Repeat_1 22 138 - -
Seca3g06502 326 CDD TST_Repeat_2 196 312 - -
Seca3g06502 326 PANTHER THIOSULFATE SULFERTANSFERASE 18 323 IPR045078 GO:0016783
Seca3g06502 326 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 198 320 IPR036873 -
Seca3g06502 326 MobiDBLite consensus disorder prediction 208 235 - -
Seca3g06502 326 Coils Coil 197 217 - -
Seca3g06502 326 ProSitePatterns Rhodanese signature 1. 57 68 IPR001307 GO:0004792
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06502 Seca-Chr3 142510891 142520443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06502 1 325 Sulfurtransferasese or Rhodanese AT1G79230 73.574 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06502 K01011 - gmx:100798053 563.533