Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06498 ATGGAGAAGAACAACAGTAGAGTCTGCAGGATTTGCGATAAGCGCTTCTCCAGTGGAAAAGCGATGGGAGGCCACATGAGATCACACTTTGCCAAATTGCCAATTCCTCCAAAGCCTGAAACCAAGAATCAATCACCGGACAACTCAGCCGAGTTAACCCAGTACCCAATTCAATCTGCTTCCTCACTGACTTACCATTCCAAAAAGAAACCAACACAGAATTTCCGATCTTTGAAGCGCAACTTCTTTGCCTTCTTGGCAAACTCAAACAGAGGAAATGAATCTGGGTCTGACCCTAAAAACCCAACCCGCAAAAGATCCAAATGCCACAGCAAACTTTCTGCAGAAGCTGATACAAAAGCTGAACCAAAACAAATGAATTCAATACCTGAAACTTTTCATGCAGAAGAAGCTGCTTGGTCTCTGTTAATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGACACACAAAATGAAGGAAGCCATCGAAAGGGAGGCAAAAGATGGTGAAAATGGTAGCGATGACTTGCTTCACATTCACACTGGAGCCAGGTTCAAGTGTGAGCGGTGCGGGAAAGTGTTTCAATCTTATCAAGCCCTTGGTGGGCACAAAGCAAACCATAAGAGAAAGAATCTAAGCCAAGAAGGTGGTGACTTGGAAGATGATCAAAGTGGCAACAATAGCAATGTTACAGATCAAAAAGCTTTTGAGTGCCCATATTGCTACAGAGTGTTCAAGTCTGCTCAAGCACTCGGTGGACACAAGAAGGTACATTTCTCCAATGCTAAGATTGCTACTGCTCATACCAGTACTAATGAATTTGGAGATATGTCGGCAGTAGATCTTAATTTTCCAGCTTCTAGAGAACATGAGGAGGATGCCACATGGAATTAA 903 0.4319 MEKNNSRVCRICDKRFSSGKAMGGHMRSHFAKLPIPPKPETKNQSPDNSAELTQYPIQSASSLTYHSKKKPTQNFRSLKRNFFAFLANSNRGNESGSDPKNPTRKRSKCHSKLSAEADTKAEPKQMNSIPETFHAEEAAWSLLMLSKDKWPESKEIKTHKMKEAIEREAKDGENGSDDLLHIHTGARFKCERCGKVFQSYQALGGHKANHKRKNLSQEGGDLEDDQSGNNSNVTDQKAFECPYCYRVFKSAQALGGHKKVHFSNAKIATAHTSTNEFGDMSAVDLNFPASREHEEDATWN. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06498 300 Gene3D Classic Zinc Finger 185 261 - -
Seca3g06498 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 215 IPR013087 -
Seca3g06498 300 Pfam C2H2-type zinc finger 8 29 - -
Seca3g06498 300 Pfam C2H2-type zinc finger 187 212 - -
Seca3g06498 300 Pfam C2H2-type zinc finger 238 261 - -
Seca3g06498 300 MobiDBLite consensus disorder prediction 89 125 - -
Seca3g06498 300 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Seca3g06498 300 MobiDBLite consensus disorder prediction 98 119 - -
Seca3g06498 300 SUPERFAMILY beta-beta-alpha zinc fingers 188 261 IPR036236 -
Seca3g06498 300 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Seca3g06498 300 SMART c2h2final6 239 261 IPR013087 -
Seca3g06498 300 SMART c2h2final6 7 29 IPR013087 -
Seca3g06498 300 SMART c2h2final6 188 210 IPR013087 -
Seca3g06498 300 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 294 IPR044303 GO:0006355
Seca3g06498 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Seca3g06498 300 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Seca3g06498 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Seca3g06498 300 MobiDBLite consensus disorder prediction 206 231 - -
Seca3g06498 300 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06498 Seca-Chr3 142405192 142406094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06498 9 295 C2H2 Transcription Factor Family AT3G60580 33.887 5.24e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g06498 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06498 - - cam:101511854 291.197