Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06492 ATGGAAGCTACAAATGGATTCTCACCAATGAACAAGTTAGGAGAAAGGGGATATGGACCTGTTTATAAGGGAATACTAATGCAAAAGGAAGTGGCTATCAAGAGTCTCTCAAGTAGTTCACGACAAGGAGCAGCAGAATTCAAAAATGAGTTAAGGCTTGAATCTAAACTCCAACACATGAATCTTGTACAATTACTTGGTTGTTGTATTCATGAAGATGATAGACTATTAATCTATGATTTTGGAGTATTAATGCTTGAGATTGTGAGTGGTAGAAGAAATAACAGCTTCAAGAATGCCTCTTGTCCAATTAATTTAGTGGGACATGCTTGGGAGCTTTGGGAAAAGGGTCAAGCACTAAAATTAATAGATCCAACATTACATGATTCTGTTGTTGAAGATCAAGTTTTGAGATGCATTCATGTTGGTCTACTTTGTGTTGAAGAATGCTCAGTTGATCGACCAACTATGTTAGAGATTTTATCAATGTTGACAAATGCCAATGAAATACTTCCTTTACATAAGAAACCAGCATTTTACTTTGGTGGAAGGGTCAATGAAGTAAAGAAATCTCCTAAGCATCTGAATTATGATTCAATAAATGACCTGACCATCTCTGATATTTCTGCAAGATAG 636 0.3569 MEATNGFSPMNKLGERGYGPVYKGILMQKEVAIKSLSSSSRQGAAEFKNELRLESKLQHMNLVQLLGCCIHEDDRLLIYDFGVLMLEIVSGRRNNSFKNASCPINLVGHAWELWEKGQALKLIDPTLHDSVVEDQVLRCIHVGLLCVEECSVDRPTMLEILSMLTNANEILPLHKKPAFYFGGRVNEVKKSPKHLNYDSINDLTISDISAR. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06492 211 ProSiteProfiles Protein kinase domain profile. 7 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06492 211 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 208 - -
Seca3g06492 211 Gene3D Transferase(Phosphotransferase) domain 1 78 179 - -
Seca3g06492 211 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Seca3g06492 211 SUPERFAMILY Protein kinase-like (PK-like) 3 180 IPR011009 -
Seca3g06492 211 SMART tyrkin_6 7 164 IPR020635 GO:0004713|GO:0006468
Seca3g06492 211 Pfam Protein tyrosine and serine/threonine kinase 11 81 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06492 Seca-Chr3 142134655 142143340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06492 3 81 Receptor kinase-like Gene Family AT4G23150 48.750 2.58e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06492 PK_Tyr_Ser-Thr 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06492 - - lja:Lj6g3v2130020.1 193.356