Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06476 ATGGCCTCATCTTCCACTGCCACAACACTCTTGTTTTCCACCGATCACCATATTCCCCTCTCTCCCTCTCCAACTATTCCCAAATCCTTCACTCGCCTCTGCAAGCCCTTCCATTCAAGGGTTCCTACTTCCCTTCCTTTTCATTGCACACGACCAACCTTTCTTGTCAGGGCCACTCATCTTGAAATTGCTTGTGCTTGTGCTGTACTACAGGTTATAAAGTGGCGATGTCCAAAGCAAACTCTTCCTCCCAACTCCGATGCTAGTTTCCAAAAGAAAGTCCTGTATCTGGAGTCTATCGGTATTGACTCTTTCTCACTTATTGAAAATCATCCGATGCTGATCACTGCCTCACTTGCTGACATAAAATCAACTGTGGAATACATTACTTCCATGGAATTCTCTGCAATTGAGTTTCGGCGTATGGTTGGCATGTGTCCAGAGATTCTGACTACCAAAGTCTCAGACATCATACCCGTCTTCACCTTCCTTCACCGTGAAGTTCATGTAGATGGCTCAAATATTAAGCATGTCATAAATCGTCGTCCCAGGTTGCTTGTCTGCAGTGTTAGTAAGCGACTTCGTCCTACCATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATCTGCTATCATGTAGTGTTGAAGAAAAGTTTATACCCAGGATTGATTACTTTGAGAATATTGGGTTTTCTCGTCGTGATGCAACTTCAATGTTTCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGGATAATTTGGAGCCTAAATACAATTACTTTGTGGTGGAGATGGGGAGAAAGTTGAAGGAGCTGAAAGAATTTCCACAGTATTTCTCATTTAGCTTAGAGAATAGAATTAAGCCTAGGCATAAACGCTGTGTAGAAAAGGGGGTGTGTTTTCCTCTCCCTGTGCTATTAAAGACAAGTGAAATGACATTTCGAAATAGATTAGATGTATGTGTAAATTCTTCAACACCCTTGAAAACATCTCCTCTGTGGTGTACTGGTTGTGCTGTTGATTAA 1044 0.4186 MASSSTATTLLFSTDHHIPLSPSPTIPKSFTRLCKPFHSRVPTSLPFHCTRPTFLVRATHLEIACACAVLQVIKWRCPKQTLPPNSDASFQKKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMEFSAIEFRRMVGMCPEILTTKVSDIIPVFTFLHREVHVDGSNIKHVINRRPRLLVCSVSKRLRPTMYFLQSIGIEEVNKHTHLLSCSVEEKFIPRIDYFENIGFSRRDATSMFRRFPQLFCYSIKDNLEPKYNYFVVEMGRKLKELKEFPQYFSFSLENRIKPRHKRCVEKGVCFPLPVLLKTSEMTFRNRLDVCVNSSTPLKTSPLWCTGCAVD. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06476 347 Gene3D Transcription termination factor 3, mitochondrial 154 328 IPR038538 -
Seca3g06476 347 FunFam Transcription termination factor MTEF1, chloroplastic 164 328 - -
Seca3g06476 347 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 SMART mt_12 208 237 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 SMART mt_12 105 135 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 SMART mt_12 176 207 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 Pfam mTERF 167 320 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 Pfam mTERF 71 170 IPR003690 GO:0003690|GO:0006355
Seca3g06476 347 PANTHER CGI-12 PROTEIN-RELATED 103 325 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06476 Seca-Chr3 141752604 141755271 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca3g06476 mTERF 7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06476 K15032 - gmx:100804440 566.614