Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06473 ATGGGAAAAGGAAGAGCACCATGTTGTGATAAGACTCAAGTGAAGAGAGGCCCTTGGAGCCCTCAAGAGGACCTTAAACTCATAGCTTTCATCCAAAAACATGGCCATGAAAACTGGCGTGCTCTCCCCAAACAAGCAGAAGGACTTCTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTAAAGAGAGGCAATTTCACAGCAGAGGAAGAGGAAACCATAATAAGGCTACATAAGGCCTTAGGAAACAAGTGGTCAAAGATTGCATCCCTTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACACACTTAAAGAAAAGATTGGCTGTGAAAAATTCAGAGTCAAGTGCTGATGAATCCAAGGTGGAATCATCAATAACTTCCTCTTCTTCATCTTCATCTGAATCATTTGTCTCAAATGAGAGACCAAATCTAGCAGAGACTACTCCTGGTAATGAATGTAATGAGCAAGCTTCCCAAGTGACAATGACAGATAAAATTGAGGAAGATTCAGAAAAACAAGTATCCAATGAACTTATTGGCATCACTGAGGATCTAAAAGATTCATCAACTTCATTATGTTCTGTTGAGTCAAATATCTTAAACTCAAGCCAGATTGTTGCCTACAAACCAGAACAACAACAATTGGCTTCTCCATTAACCTATCTAGGACCTTATGATGTTGACAATACATTAGAAGAGGTGGATAAACCAAACCATCTGGTTGAAATACCATGGGAATCAGATTATGATTTTTGGAAGTTGTTAGATAACATTGAATCTTTTCAATCAAATGAAGTCCAATTAGGGGAGTTCCCAGCCAGTCAAAGCCATAATTTTGGAGAAGATAGTGTTCAAGATGCTGATGCAAGGAAATGGTCCCATGACTTTGAGAATGAGTTTGGAGTAGGTGAAACAAAGGAGTCAAAGAATTATGCAGTTGAGCCAGAAATAGACCCTCAAACATTTTTTTTCAATGATATGACAAGGCCAGAATCTGAATTAGACTTGGGTTATGTTCAATTATGGCCCTCTTGGCCTCAAAATACTAGTCTTTAA 1092 0.3919 MGKGRAPCCDKTQVKRGPWSPQEDLKLIAFIQKHGHENWRALPKQAEGLLRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIRLHKALGNKWSKIASLLPGRTDNEIKNVWNTHLKKRLAVKNSESSADESKVESSITSSSSSSSESFVSNERPNLAETTPGNECNEQASQVTMTDKIEEDSEKQVSNELIGITEDLKDSSTSLCSVESNILNSSQIVAYKPEQQQLASPLTYLGPYDVDNTLEEVDKPNHLVEIPWESDYDFWKLLDNIESFQSNEVQLGEFPASQSHNFGEDSVQDADARKWSHDFENEFGVGETKESKNYAVEPEIDPQTFFFNDMTRPESELDLGYVQLWPSWPQNTSL. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06473 363 MobiDBLite consensus disorder prediction 121 164 - -
Seca3g06473 363 FunFam Transcription factor RAX3 9 70 - -
Seca3g06473 363 SMART sant 69 117 IPR001005 -
Seca3g06473 363 SMART sant 15 66 IPR001005 -
Seca3g06473 363 CDD SANT 18 64 IPR001005 -
Seca3g06473 363 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Seca3g06473 363 Gene3D - 71 142 - -
Seca3g06473 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Seca3g06473 363 CDD SANT 72 115 IPR001005 -
Seca3g06473 363 Gene3D - 16 69 - -
Seca3g06473 363 MobiDBLite consensus disorder prediction 130 164 - -
Seca3g06473 363 ProSiteProfiles Myb-like domain profile. 11 64 IPR001005 -
Seca3g06473 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Seca3g06473 363 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Seca3g06473 363 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Seca3g06473 363 Pfam Myb-like DNA-binding domain 16 64 IPR001005 -
Seca3g06473 363 FunFam MYB transcription factor 71 146 - -
Seca3g06473 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06473 Seca-Chr3 141711067 141714053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06473 1 323 MYB Transcription Factor Family AT1G79180 44.789 1.66e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g06473 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06473 K09422 - gmx:100101836 540.036