Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06457 ATGATGGATGGTAATGCTACTGATTCATCCAACAAGAATATATCACATGCTTCAAATGTTGGCGAGGACCTAAACATTGAACCTTGTGTTGGGATGGAATTTGACTCTATTGAAAAAGTTAGAGAATTTTATAAATCTTTTGCTAAAAAGAGGGGTTTTGGAGTACGTGTTCGTTCAACTAAGCCCAAGAGAGTTGCTTTGGTATGTTGCAATGAAGGTCAACATATAGTGAAAAACTCTAGAAACGAAGAAACTCAAGATCACATGGGTCAAACCAAAAGAAAGTGTTCAACTACTCGAAGTGGTTGTCAAACTTCACTTATTGTTTCAAGAGGCACAATAAAAAGCAATTGGATTATACAATTCTTTAACAATGATCATAACCACGTCATGGTTAGCCCTCGAAGTGTGTCTTATATGAGGTGTCATAAGAAGATGACTATTGGTGCAAAAAGCCTTGTTGAAAAATTTGAGGAAGAAGGCTTGTCGACGGGAAAGGTTGCTAAAATTTTCAATGATGGTGACTTGGCTTTCTCTAACAGAGATTGTTGGAATCATATCAGAAATTTACGTAGAAAGAATTTAGATGTCGGAGATGCACAAAATGTTTTTAATTATTGTAAAAGAAAACAGGCTGAAAACTATAATTTTTTCTATTCAATCCAAACTGATAATGAGTCTCGGATGGATCTAGCTATTGGAGCAGCTTTGGCTAAAGTATTTCCAGAAACTCGACATCGTCTTTGCTTATGGAACATTAGAAAGAAGTTTCCTGAAAAGTTGGCTCACATATATCATAAAAAGTCTATTTTCAAGCGTGAGCTTAAAAGATGCATTCGAGATTCACCGAGTATCCAGATTTTTGAGGAAGAATGGAAGCGGTTAATGATTGAGTATAACTTGGAGGATAATGAATGGCTTCAAGGGCTATATAAGATTAGAGAATCACGGGTGCCAATTTATAATAGAAGTACATTCTTTGCTGGGATGAATACTACTCAAAGAAGCGAGAGTATTAATGCATTTTTTTATTCTTTTGTAGATGCATCAACAACATTACAAGAATTTGTGTTAAAGTTTAAGAAAGCAATTGGTAGCCGCTTGGAGGATGAAAGAAAGGAAGATTATGAATCTAGGCATAAATCACGTATCTGA 1155 0.3532 MMDGNATDSSNKNISHASNVGEDLNIEPCVGMEFDSIEKVREFYKSFAKKRGFGVRVRSTKPKRVALVCCNEGQHIVKNSRNEETQDHMGQTKRKCSTTRSGCQTSLIVSRGTIKSNWIIQFFNNDHNHVMVSPRSVSYMRCHKKMTIGAKSLVEKFEEEGLSTGKVAKIFNDGDLAFSNRDCWNHIRNLRRKNLDVGDAQNVFNYCKRKQAENYNFFYSIQTDNESRMDLAIGAALAKVFPETRHRLCLWNIRKKFPEKLAHIYHKKSIFKRELKRCIRDSPSIQIFEEEWKRLMIEYNLEDNEWLQGLYKIRESRVPIYNRSTFFAGMNTTQRSESINAFFYSFVDASTTLQEFVLKFKKAIGSRLEDERKEDYESRHKSRI. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06457 384 Pfam FAR1 DNA-binding domain 42 132 IPR004330 -
Seca3g06457 384 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 379 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06457 Seca-Chr3 140903093 140904508 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g06457 FAR1 1.1e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06457 - - mtr:112420966 405.986