Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06454 ATGGCGTCGAACAAGATCGAACGCGGTCACCAGATGTACCGTGATGGACGCTACAGCGAGGCGTTAGGGTTCTACACGGAGGCAATCGCCATGGCCAAGACCAATCCCCAGAAGATCGCTTTGCATAGCAACCGAGCTGCTTGCTACCTCAAGCTTCACGATTTCAAGAAGGCAGCAGAAGAGTGTACCTCAGTGCTTGAGCTTGATCACAAACACAGTGGAGCACTGATGCTGCGGGCTCAAACACTGGTGACCCTGAAGGAGTATCATTCTGCACTTTTTGATGTCAATAGACTCTTGGAGTTGAATCCATCCTCAGAGGTCTATCAAAATCTTCATGCTCGCTTGAAGACACAATTGTCACTTGCTCCAATACCAGAGTCAGAAGAGGAGTTTGAAGAACAGGGAGATGAGAATGATGAGGTGATGCTAAATAGAGAGAATAAGAAGGAAGAAATGGGAGCAAAATATGAAGCAACATCTAATATAAGGACAGATAAAAAGGATGAGCTTGGCAAAGATATTAGTAGTGGTGAATGTGTTCTCAAGGAAACAAACCCCAAGTTTTCGTCCAAACAAAGAAGAGACCAAAATTATGAGCCTAAAAAGTCCACAGCGGAGGTTATAGCTCCTAAACCACCAAACAGGGAATCAACCGAGCAACAATCCAAAGGATGGCAAACAATTCCAAAACCAAAAGGACATTCAGCTCTGGACTACGCTCGGTGGGACAGTGTTGAAGATGATTCTAGTGAAGATGATGACGATGAAGAATCTTTGCCACAGTACCGATTTCGTGTGAGAACAGTTGGTGTACGTCCTGTAAAGTGA 831 0.4501 MASNKIERGHQMYRDGRYSEALGFYTEAIAMAKTNPQKIALHSNRAACYLKLHDFKKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLAPIPESEEEFEEQGDENDEVMLNRENKKEEMGAKYEATSNIRTDKKDELGKDISSGECVLKETNPKFSSKQRRDQNYEPKKSTAEVIAPKPPNRESTEQQSKGWQTIPKPKGHSALDYARWDSVEDDSSEDDDDEESLPQYRFRVRTVGVRPVK. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06454 276 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca3g06454 276 SMART tpr_5 73 106 IPR019734 GO:0005515
Seca3g06454 276 SMART tpr_5 39 72 IPR019734 GO:0005515
Seca3g06454 276 MobiDBLite consensus disorder prediction 188 202 - -
Seca3g06454 276 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Seca3g06454 276 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 276 - -
Seca3g06454 276 SUPERFAMILY TPR-like 6 119 IPR011990 GO:0005515
Seca3g06454 276 Pfam Anaphase-promoting complex, cyclosome, subunit 3 16 93 - -
Seca3g06454 276 MobiDBLite consensus disorder prediction 148 262 - -
Seca3g06454 276 MobiDBLite consensus disorder prediction 215 229 - -
Seca3g06454 276 MobiDBLite consensus disorder prediction 148 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06454 Seca-Chr3 140018552 140021854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06454 2 120 Calmodulin-binding Proteins AT3G25230 34.351 1.89e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06454 - - gmx:100792046 429.869