Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06447 ATGCCCCTCTCTCCCTCTTCCATGGCTTCCTCCATCCCTCACTTGTATTCAAACTACTCATTCACTTATTCTGATCATCTTTCAGATCAGTTCCCCATCCCTTCTAATACCTCTTTCATGGACAATAATAATAATAATAATACCATGTGGGGTTGTCATCAAGATAGCTTATTTCCTGTGGTTGATAATAATGGGGCACTTGATCATATTGTGTCACTGGATTGTGATACCTTGTCTTCTACTTGGATGCCAACCTTCTCTGAGCAACTAGCTGCTGGAGCCATTAATAATAGCAATTCAGATAACAACTTGGCCATTTCAGATTGTAAAATGGGCTTCTATGGTGGCATTGCTGCTGCAGGATTTCAGAATTTCAACAGCAGATTCCAGCCTCATATTGGTGACTTTGGAGATGAATGTTGTGGTTTTCTGGAGGATATTAAGCCACCTAATAATTCTTATCCTAATACAGCTGCCACCAGAGAAAACTGGGGAATTCAAGGTAACCAAATAGCAGCAGTTGAAGAGCCAAACATAAAGGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATTAAGTATGCATGTCGGAAAACGTTAGCTGATCGGCGAGTGAGAGTTAGGGGAAGGTTTGCAAGGAACAATGAGCTATGTGATCAGGAAGACAATATGGCCACAAAAAAGCATCACAAATTAGATCATCATGACTTTTATGGCGCCGATTCATTTCAGTTCCAGTTAAAGAATGAGGAGGAGGACTGGTTGCAAGAGGCCATGGCGAGTTTGGTCTATTTATCTCATTCTTCACCGGAAGATATGTGA 873 0.4032 MPLSPSSMASSIPHLYSNYSFTYSDHLSDQFPIPSNTSFMDNNNNNNTMWGCHQDSLFPVVDNNGALDHIVSLDCDTLSSTWMPTFSEQLAAGAINNSNSDNNLAISDCKMGFYGGIAAAGFQNFNSRFQPHIGDFGDECCGFLEDIKPPNNSYPNTAATRENWGIQGNQIAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDQEDNMATKKHHKLDHHDFYGADSFQFQLKNEEEDWLQEAMASLVYLSHSSPEDM. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06447 290 ProSiteProfiles CCT domain profile. 189 231 IPR010402 GO:0005515
Seca3g06447 290 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 155 244 IPR045281 GO:0009909
Seca3g06447 290 Pfam CCT motif 189 231 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06447 Seca-Chr3 139557969 139559953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06447 185 242 C2C2-CO-like Transcription Factor Family AT5G15850 46.552 8.40e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g06447 CCT 9.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06447 - - gmx:102660475 382.874