Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06442 ATGGGGGAAGAAAATGAAGAGATTAAATCATTTAAGGATTTGGGCTTAGCTGAGCAATTGGTGGAAGCATGTGAAAAACTGGGTTGGAAAAATTCGTTAAAGATACAGGCAGAGGCGATTCCTCTTGCGTTGGAAGGAAAAGATGTGATTGGACTTGCCCAAACAGGTTCCGGTAAGACTGGTGCTTTTGCTCTTCCCATATTGCATTCCCTTTTAGAAGCACCACGCCCAAAAGATTTCTTTGCTTGTGTATTGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCGGAAATTGGTGTAAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAGCAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAACACACCAAAGGATTTTCTCTTAGTAGATTAAAATACTTTGTCTTAGATGAGGCAGACAGGCTGCTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGTGATTCCTCGTGAACGGAGAACATTTCTATTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTTCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCAAAATATTCCACTGTTGACACACTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACAAAAGGATTGCTACCTTGTATACATTCTTACTGAAATGGCTGGAAGTACATCAATGGTATTCACTCGGACATGTGATGCAACTCGGCTTCTGGCCTTGATGCTTAGGAATCTTGGCCTTAAAGCCATCCCAATTAATGGTCATATGAGCCAGCCAAAGAGACTCGGAGCTTTGAATAAGTTCAAGTCTGGAGAATGCAATATTCTCCTTTGTACTGACGTAGCTAGTAGAGGACTGGATATTCCAACGGTAGATGTGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAGAAGCTGCCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGGAGGAGCGTGTTAGCGAGGCCAAAAGATTAGCAGTAATGAAAATGAAGGAGACGGGAGGGAAGAAGAAACGGAGGGGCGAAGGAGATGACGGTGAGGAAGATATTGACAAGTACTTAGGTCTTAAGGATGGAAAATCATCCAAGAAGTTTAGAAGATGA 1317 0.4267 MGEENEEIKSFKDLGLAEQLVEACEKLGWKNSLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHSLLEAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKHTKGFSLSRLKYFVLDEADRLLNEDFEESLNEILQVIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKQKDCYLVYILTEMAGSTSMVFTRTCDATRLLALMLRNLGLKAIPINGHMSQPKRLGALNKFKSGECNILLCTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAVMKMKETGGKKKRRGEGDDGEEDIDKYLGLKDGKSSKKFRR. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06442 438 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Seca3g06442 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Seca3g06442 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Seca3g06442 438 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 394 - -
Seca3g06442 438 SMART ultradead3 28 228 IPR014001 -
Seca3g06442 438 Gene3D - 2 218 IPR027417 -
Seca3g06442 438 MobiDBLite consensus disorder prediction 401 423 - -
Seca3g06442 438 CDD SF2_C_DEAD 225 354 - -
Seca3g06442 438 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Seca3g06442 438 Gene3D - 219 391 IPR027417 -
Seca3g06442 438 SMART helicmild6 264 345 IPR001650 -
Seca3g06442 438 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Seca3g06442 438 Pfam Helicase conserved C-terminal domain 239 345 IPR001650 -
Seca3g06442 438 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Seca3g06442 438 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06442 Seca-Chr3 139398527 139408422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06442 6 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.117 2.04e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06442 K14777 - gmx:100775796 774.622