Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06440 ATGAAGGAGGGTGGTAGAAAACAAGGTGCAATGGCACCATGTGCAGCATGCAAGCTTCTTAGAAGGAGATGTGCACAGGATTGTGTGTTTGCACCTTATTTCCCTGCAGATGAACCTCACAAGTTTGGCAGTGTTCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGCAGGAATTACCAGAACACCAAAGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGAGTGAGGGACCCTGTTTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGTGCTTCAAACTCAATTGGCATTGGCACAAGCAGAAGTTGTGCACATGAGAATGAGCCAATTCTCATCCTCCTCAGATCCTCAACCATCATCAATGCCTCCTCCTATAGCCTCTGAGAACTTATACCAATCAAATAGGCTCCTTTCTTCTCAGACCAAGTCCCTTTTTGGCACAGACACTGACACCAACATGGGGCAATCCTTGTGA 510 0.4529 MKEGGRKQGAMAPCAACKLLRRRCAQDCVFAPYFPADEPHKFGSVHKVFGASNVNKMLQQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMSQFSSSSDPQPSSMPPPIASENLYQSNRLLSSQTKSLFGTDTDTNMGQSL. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06440 169 Coils Coil 93 113 - -
Seca3g06440 169 MobiDBLite consensus disorder prediction 120 145 - -
Seca3g06440 169 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Seca3g06440 169 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Seca3g06440 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06440 Seca-Chr3 139366745 139371028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06440 1 121 AS2 family AT1G31320 85.950 1.81e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g06440 LOB 4.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06440 - - gmx:100803188 240.736