Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06436 ATGGGTGTTAACGAAGATTTCAATAACAAGGATGAAGAGTATGTGGAAGATGAAGTTCCACTTCCAGGATTTCGGTTCCATCCAACAGATGAAGAACTTGTTAGTTTCTATCTTAGAAGGAAGCTTGAAAAGAAACCCATCAGTATTGAGCTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCGAGTGTAACTGGAGGAGAGAAAGAAGGGTACTTCTTTTGCAAAAGAGGAAGAAAGTATAGGAACAGCATAAGACCCAACAGAGTCACAGGGTCAGGGTTCTGGAAAGCAACAGGGATAGACAAGCCAGTGTATTCACATGGAGGAGAAGGCAATGACTGTGTTGGACTCAAGAAAACACTTGTTTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTTCTAACACTGAAACCAAAACAAACCTTCCCAATGCCAACAAGAATTATCTAGATACTGCCCATGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTGCCACAAAGAAAGAACATGCCAGATTTGAGACAGTTAGGTGGTAAGCGTCATCATCATGAAAAGAGCAGAATGAGCAGTAATGGAAGTGATAATCAAGAAACATATATCAATTTTGGTTGTTATGAGAATGAGCAGAAACCTGCTGTCACATCAAGCAGTGAACAATATCAAAGGAATAATCATCATCAGCATCATGTAGGCGAGTTTAGCTCTCAGGTGGCACAACAACCTCAACAAAGTGTACCATCTTCCAACTTTTGGATTAATAACCCGGTTGCCAATGACTTCTTCACATTTGATAACTGGGATGAGCTTGGATCAGTTGTCAACTTTGCTGCTTAA 903 0.4031 MGVNEDFNNKDEEYVEDEVPLPGFRFHPTDEELVSFYLRRKLEKKPISIELIKQIDIYKYDPWDLPKASVTGGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTETKTNLPNANKNYLDTAHEAEIWTLCRIFKRNVPQRKNMPDLRQLGGKRHHHEKSRMSSNGSDNQETYINFGCYENEQKPAVTSSSEQYQRNNHHQHHVGEFSSQVAQQPQQSVPSSNFWINNPVANDFFTFDNWDELGSVVNFAA. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06436 300 Gene3D NAC domain 29 188 IPR036093 GO:0003677|GO:0006355
Seca3g06436 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 261 - -
Seca3g06436 300 SUPERFAMILY NAC domain 18 185 IPR036093 GO:0003677|GO:0006355
Seca3g06436 300 Pfam No apical meristem (NAM) protein 22 150 IPR003441 GO:0003677|GO:0006355
Seca3g06436 300 FunFam NAC domain-containing protein 35 29 188 - -
Seca3g06436 300 ProSiteProfiles NAC domain profile. 20 185 IPR003441 GO:0003677|GO:0006355
Seca3g06436 300 MobiDBLite consensus disorder prediction 192 216 - -
Seca3g06436 300 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06436 Seca-Chr3 138968554 138970888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06436 6 200 NAC Transcription Factor Family AT1G26870 60.714 1.07e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g06436 NAM 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06436 - - gmx:100790471 446.817