Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06410 ATGGAGCACAATGAATGTCAGGCATTTGAAATTGATGAGCCTAAAGATATTTTTTTGGGTCAAGTTATGTATAGCAAAGATGAAGCTTATAACTTATACCAAGAACATGCATTCAAAATGGGTTTTAGTGTAAGAAAAGGGAGGGCATTGTACTATGATAGTGAGAAAAAGAATATACGCTTGAAAGACTATTATTATTCCAAACAGGGGTTTAAGAATAATGAACCTCAAGGTGAAGTGACTTATGAAAGAGCAGATTCAAGAACAAATTGCCAAGCTATGGTGAGATTTAATGTGAGTAAGGAAGGATTATGGAAAATTACAAAGCTGGAATTAAATCACAACCATGACTTTGTGCCACCTGAGCAAAGGCATTTGTTACGTTCTATGAGAAATATGTCAAATGTCAAAGGAGACCTCATAAAATCCATGGTGAATGCCGGTATGAGAGTTACTAATATTTGGAGTTATTTAGGAGAAGAGGTTGGTGGATGTGATAACCTCGGTATAACAATGAAAGATATGCATAATTATGTTTACTCTGAAAAGATGAAATTAATTGATGCTGGTGATGCCCAGGCTTTAGTGAACCACTTACAAAGTAGACAAGCACAGGATGCAATGTTCTACTATAGTGTTCAGTTAGACCAGGAATCACGTTTGGCTAATGTATTTTGGAGAGATGGTAAGTCTAAAGTTGATTATGATTGCTTTGCGGATGTTGTGGTTTTTGACACCACTTATCGTACTAACAAATATAACTTGATTTGTGCCCCATTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCCTTACTATCTAATGAAACTTCAGCTTCTTTTTCTTGGTTGTTCAAAGTGTTTTTGGAAAGCATGGAAAACAAACAACCAAAAACAATTTTTACAGATCAAGATGTTGCTATGGCTAAAGCAATTGGAGAGGTAATGTTAAATACACGCCATCGATTATGCTTATGGCATATAACTAAAAATGCTCCTTCTCATTTGGGTTCTCTCAATTCTGATTATAAGTTTCAAAGCTTATTCAATAAATACATGAAAGGTTGTGACTCAGAAGAAGAATTTCAAAGCACTTGGGATGAGATGATAAACGAGTACAAACTTCATGGTCATCAATGGTTGAGCAATATGTATAAAATTCGTCACAAGTGGAGCACTGCTTTTAGCAAAGATATATTCTCTGCTGGTATCAAGTCCTCTCAAAGGAGTGAAAGTACAAATAGTGTTTTGAATGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCATTTTGGCATTTGAGAAGATGGTAAAAAAGTGGCAGCATTTAGAGGTTGAGAAGGAATTCAAAAATAAGCAAAGTGAGCCTCCTCGCATTATAAATATTAGTGAAACTCTGTGA 1416 0.3524 MEHNECQAFEIDEPKDIFLGQVMYSKDEAYNLYQEHAFKMGFSVRKGRALYYDSEKKNIRLKDYYYSKQGFKNNEPQGEVTYERADSRTNCQAMVRFNVSKEGLWKITKLELNHNHDFVPPEQRHLLRSMRNMSNVKGDLIKSMVNAGMRVTNIWSYLGEEVGGCDNLGITMKDMHNYVYSEKMKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLANVFWRDGKSKVDYDCFADVVVFDTTYRTNKYNLICAPFVGVNHHWQNVMFGCALLSNETSASFSWLFKVFLESMENKQPKTIFTDQDVAMAKAIGEVMLNTRHRLCLWHITKNAPSHLGSLNSDYKFQSLFNKYMKGCDSEEEFQSTWDEMINEYKLHGHQWLSNMYKIRHKWSTAFSKDIFSAGIKSSQRSESTNSVLNEIAGKTTSLTQFILAFEKMVKKWQHLEVEKEFKNKQSEPPRIINISETL. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06410 471 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca3g06410 471 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 462 IPR031052 GO:0006355
Seca3g06410 471 Pfam MULE transposase domain 241 335 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06410 Seca-Chr3 138439072 138440487 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g06410 MULE 5.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06410 - - tpra:123905334 798.505