Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06404 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCACCGTCGGGTTCCATTTCGGGCTCGTCCTCTCGCTCCTCCTCCCCCTCAGATTCCCGCTCCTCCTCTCGCTCACGCTCTCGTTCGCGCTCCCGTTCTCCCTCTCGTTCCAGATCTTTCTCCTCCTCCTCCTCTCCCTCCCGCAGCCGGAGCCGGAGCCCTCCCCCTCAGAGACGGAGAAGTCCTGCTGAAGCAGCTAGGCGAGGCCGATCTCCTCCTCCTCAGTCTAAGAGAACTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTGCATGTAGAAAAACTCAGCAGGAATGTTAATGAGGGCCATTTGAAAGAAATTTTCAGTAATTTTGGCGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAGATAGATGGCAATGTCATTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCCCCACCCCCAAAGGCTTCTGCTGTTGCTCCGAAGAGAGAGGCCCCTAGGACTGATAATGCTGGTGCAGATGTTGAAAAAGATGGGCCGAAGCGTCAAAGAGAATCTTCTCCTCGGAGAAAACCTCCCTCACCACGAAGGAGATCTCCTATGCCTCGAAGGGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTGCGTCGTCGTTTAGACTCTCCTCCTTATCGCCGTGGAGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGGAAGAGGTCGCTCTCCATCACCACCTAGGCGCCTTAGATCTCCCGCAAGGGTCTCACCTAGAAGATTGCGTGGAAGCCCAGGTCGTAGACGTTCTCCTCCTCCTCCACCGAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATCAGTCGTAGGCGCAGTCGCTCTCCAGTACGTAGGTCTGCACGCTCACGCTCAAGATCATTCTCACCTCGCAGAGGTCGACCACCTGTGAGACGGGGGAGGTCATCATCTTACTCTGATTCACCAAGTCCACGCAAGGTATCCCAGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGCAGCAGCAGCAGTTCACCACCCCCAGCTCGCAAACCATAG 1248 0.5425 MAKPGRGRRSPPSGSISGSSSRSSSPSDSRSSSRSRSRSRSRSPSRSRSFSSSSSPSRSRSRSPPPQRRRSPAEAARRGRSPPPQSKRTSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKREAPRTDNAGADVEKDGPKRQRESSPRRKPPSPRRRSPMPRRVGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRLRGSPGRRRSPPPPPRRRSPPRRARSPPRRSPISRRRSRSPVRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSQRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06404 415 MobiDBLite consensus disorder prediction 44 62 - -
Seca3g06404 415 MobiDBLite consensus disorder prediction 1 101 - -
Seca3g06404 415 MobiDBLite consensus disorder prediction 369 384 - -
Seca3g06404 415 MobiDBLite consensus disorder prediction 12 32 - -
Seca3g06404 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Seca3g06404 415 MobiDBLite consensus disorder prediction 203 228 - -
Seca3g06404 415 SUPERFAMILY RNA-binding domain, RBD 90 188 IPR035979 GO:0003676
Seca3g06404 415 MobiDBLite consensus disorder prediction 180 415 - -
Seca3g06404 415 CDD RRM_RNPS1 105 177 IPR034201 -
Seca3g06404 415 FunFam Serine/arginine-rich splicing factor SR45 3 188 - -
Seca3g06404 415 MobiDBLite consensus disorder prediction 296 366 - -
Seca3g06404 415 Gene3D - 15 187 IPR012677 -
Seca3g06404 415 MobiDBLite consensus disorder prediction 395 415 - -
Seca3g06404 415 MobiDBLite consensus disorder prediction 244 278 - -
Seca3g06404 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Seca3g06404 415 SMART rrm1_1 104 177 IPR000504 GO:0003723
Seca3g06404 415 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06404 Seca-Chr3 138296545 138302247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06404 105 178 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 3.17e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06404 K14325 - gmx:100783566 252.677