Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06389 ATGGAAGCATTGAAAGAAACGGATATTTCCATTCGAATTGTTGGAAATATAAAAGATTTTGCTATAGCTGCGAAGAAAATTGAATATTTTGAAGAGATGGCCTCACTTTTGAGCACAATACTGTTGCGGTGGCCTTCGTCTAGGTTCCCTGTTTTTAATGATGTTGAATTTATGAATGGTTTAGCAAACATGCATACAAGGATGGATAGTTCTATTCAACCCGTACTTTTAAAACTGTATACATCTTTAGCTTTATGTGATTCTATAGCAAAGAAACTTATAGAGGATGGAAAAGTATTTCTACAAATGGTTGTGCAGGCAATGGGAAAATCAAATCCTTATGATGTTCGGATAGAAGGGTTTAGGCTTGCTCAATGTTTATTGAGATCCCAAGAGAATTGTTTAAAAGTGGTGGATTTATGTGGTGAAGCTCTTGTTGATGCCATAGTTTGTGGGATGAGAGAAACAGGGCTTAGTTCCAATAAAAATGGGAACAACCATGGTTCTTTGTTAATGGAAGCTTGTCGATTGGCTCTAATAACTCGATGGGCTGGTGATCATCATATAATTTTTTGGAAACAAGGAATTGATAGAGTCCTCCTTAATCTTCTGTTTGAAAATATTCAAGACCAATCGTCTGAACTTATCTTGTCATTGGAAAAACAAATATCCATGGTGAAGGAGGGATTGAAAGCCAATTATCATCTTGGTCTAAGGAGTTATTTGTGGGACATTCTTGGGTTGCTTACAATTCATTGTGGAGAAAATTTTAACCCTTATTCCCATGGAAGTGAGCTCCACATCAACTTACTAATTATGTGTGCATGCTTGACTTTTGTGGATACAATTCACAAATGGTGCCGAATATTTCAAAAGGATGTCGATAATAATTTTCAAGGTGAACCAGTATCAAGGGCTGTTCTAATGATGATTTATTCTCCATGTAATTACATTTCCTCACATGCTAGATTCTTATTATCTGATATACTGAAGGTGAAAGGCATGCCATGCTTAAAAAACTTAATACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTTGTTATTAACTTAATAGGGTTAACTTGTTTTTCAAGTTTACCACAGTATCATGGATGTATCATTGAAAGCAAAGGGATAAAGGCAGTTGTTCTTCTTGTGCAACGATGCTTAAGTAATGACATTCATGTAGAAAGGCCTGATGTTGCTTCTCATTTGCATTCAACATTCCATGAAAGGTCTTGTTGCTGGATTGGTAAAGAAGATTGGGAAGGTTCTGATGTTCTTTTATTTTATGGTTTGTGGAGCTTAGCTGAATTTCTTCATCAGTGTGGCCTTTTACAAGATAATCCTCGGCAGTTTACTAGAGAGGTGACCAACATTAAAGCTCAATTAGTTAGCAAACTGAATGAGACCTTTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTGCCAAAAGGATTGGGGAATCTCTTAATAAGGAAGAGTATAAAGATTTGCGACTCATTGTAGCAAATGAGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCACTCCTGCCTCCCGAAGTATTATCTAGTAGTAAGAGTTCTAAAGAAGTAACAGATAAGTATGCTGGAGAGACCATGAGAGAAGTTCGTTTATCTTCTCGCGTTGATTATGAAGCATTGTTGTTGTTGTTGGAATATGTATACGTGGGATGCTTACATGCGGGAGAAGAAGCAGTGAAGAAGCTGAAAATTCTTGCTAAGCGTTGCAATCTACAGCCTCTCTTGCGATTGCTTTATAGACAATGTCCAAAGTGGGGCACACTTTTCCCCAGCTTAAATCTTACTTCATCTCTGGATTCAGCTGGAAGTTGTTTTTCGTATGGTTTGCTTCTTGATCAGATTCTTCTAGATATCTTGAGAGATGTCATATTGGAAGCTAAATCAAATAAACTCGTTGGGTGGACATGCAATATTTGTTCTCACTCAGTGCCACATTTGCATGTTCACAAAGTGATATTGCAATCTGGCTGTGATTATTTACGAGGTTTGTTCCGATCAGGAATGCAAGAGAGTCATTCACAAGGTATAAAGGTTCCTATTAGCTGGGAAGCATTGATGAAACTAGTACTGTGGTTATATTCTGATGAGCTGCCAAAACCTCCCTCTGGATGTTTGTGGGATAATATGGATGATGAAGAAAAGCTATTCAATCTGCAACCATATGTGGAGCTTTGTTGGCTTGCTGAGTTCTGGATTTGGGAAAATATTCAGGAAGCCTGCTGGAATGTGATTATGTCTTGTCTTGATTCTTCTAAGCAGTTGTCCATTAAAATAATAAAAATGGCTCATGAGCTCTCTTTGTGGAAGTTGGTTGACATTGCCGCAAATCTCATAGCTCCTTCATATAGGCAATTACTAGATTCTGGTGAACTTGAAGAATTTGATGATGCACTAGTTCACTTAATTTGTTGTGCTTCTATTCGACTTAACCAAGAAGGTGAAAATAGCTTTATGTGA 2601 0.3706 MEALKETDISIRIVGNIKDFAIAAKKIEYFEEMASLLSTILLRWPSSRFPVFNDVEFMNGLANMHTRMDSSIQPVLLKLYTSLALCDSIAKKLIEDGKVFLQMVVQAMGKSNPYDVRIEGFRLAQCLLRSQENCLKVVDLCGEALVDAIVCGMRETGLSSNKNGNNHGSLLMEACRLALITRWAGDHHIIFWKQGIDRVLLNLLFENIQDQSSELILSLEKQISMVKEGLKANYHLGLRSYLWDILGLLTIHCGENFNPYSHGSELHINLLIMCACLTFVDTIHKWCRIFQKDVDNNFQGEPVSRAVLMMIYSPCNYISSHARFLLSDILKVKGMPCLKNLIHTLDYTSSLESYGSFDKLQLVINLIGLTCFSSLPQYHGCIIESKGIKAVVLLVQRCLSNDIHVERPDVASHLHSTFHERSCCWIGKEDWEGSDVLLFYGLWSLAEFLHQCGLLQDNPRQFTREVTNIKAQLVSKLNETFSSTSFSPGVKWYVSYILSYFGFYGFPNEFAKRIGESLNKEEYKDLRLIVANEDSVSVHGVILAVRCPSLLPPEVLSSSKSSKEVTDKYAGETMREVRLSSRVDYEALLLLLEYVYVGCLHAGEEAVKKLKILAKRCNLQPLLRLLYRQCPKWGTLFPSLNLTSSLDSAGSCFSYGLLLDQILLDILRDVILEAKSNKLVGWTCNICSHSVPHLHVHKVILQSGCDYLRGLFRSGMQESHSQGIKVPISWEALMKLVLWLYSDELPKPPSGCLWDNMDDEEKLFNLQPYVELCWLAEFWIWENIQEACWNVIMSCLDSSKQLSIKIIKMAHELSLWKLVDIAANLIAPSYRQLLDSGELEEFDDALVHLICCASIRLNQEGENSFM. 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06389 866 Gene3D Potassium Channel Kv1.1; Chain A 665 836 IPR011333 -
Seca3g06389 866 PANTHER OS06G0674800 PROTEIN 2 861 IPR044953 -
Seca3g06389 866 Pfam BTB/POZ domain 693 757 IPR000210 GO:0005515
Seca3g06389 866 CDD BTB_POZ_ZBTB_KLHL-like 693 750 - -
Seca3g06389 866 SUPERFAMILY ARM repeat 79 508 IPR016024 -
Seca3g06389 866 Gene3D Potassium Channel Kv1.1; Chain A 506 629 IPR011333 -
Seca3g06389 866 SMART BTB_4 668 796 IPR000210 GO:0005515
Seca3g06389 866 SMART BTB_4 524 634 IPR000210 GO:0005515
Seca3g06389 866 SUPERFAMILY POZ domain 502 625 IPR011333 -
Seca3g06389 866 ProSiteProfiles BTB domain profile. 668 749 IPR000210 GO:0005515
Seca3g06389 866 SUPERFAMILY POZ domain 693 793 IPR011333 -
Seca3g06389 866 ProSiteProfiles BTB domain profile. 524 604 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06389 Seca-Chr3 137900968 137908539 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca3g06389 BTB 1.7e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06389 - - mtr:25487018 1373.99