Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06376 ATGGCTTCCGAACGTGGAATAAGCCCCGAGACATTGGGGAAAGCTGTGGACTCTCTCCTCAAATGGCGCAAATCTCAATCAGAGACCCAAAAGCCAAAACTCTTCGACCAAGACGAAGAGTTCGTTTACCTCGTCCTCACACTCAAGAAAATCCCCCAAAAGGGTCGCGTTAACCCTCACAAGATCCCTCTCCCTCACTCCCTCCTCTCCCCTTTCTCCGAACAGCTGCTCATCCTCGACGACAGGCCCAACAAGGCCCGCATCACAAAGCCCCAGGCCCAGAAGAAGATCCAGTCTGAGTCCATCCCCATCTCGAAGGTCCTTAAGCTCTCTAAGCTCGCCTCTGATTACCGTCCCTTCGAAGCAAAGCGGAAGCTCTGCGATTCCTACGATCTCTTCTTCGCTGAAAAGAGCATCGTTCCCCTCCTGCCGCGGTTGCTCGGGAAGCAGTTTTTCAAGAAGCGGAAGATTCCTGTGCCGTTGGATTTGAAAAAGAATAACTGGAAGGAGCAGGTGGAGAGGGCGTGTTCTGCTGCGATGTTGTTCTTGAGGACGGGAACTTGTAGTGTTGTTAGGGTTGCTAAGCTGAGCATGGAAAGGGATGAGATTGTTGAAAATCTGGTTGCTGCTATTGATGGTGTTGTTGAGGTTGTTCCCAAGAAGTGGGGGAATGTGAGGTCGTTTCATGTGAAGTTGTTAGATTCAATTGCCTTGCCGATTTATCAGGTCCTTCCTGATTTGAAGTTGAAAATTGAGGGAACAAAGGCCGAAGTGGAGGTGCAGGAGAAGAAGAAGAAGGAGAAGGATGAGGCTGGAGAGATTAAGAAGAAGAAGAAGGGGAGGATTCATGAAGTTAGGTACATGGATGATGAAGTGGGCGAGGATGAGTCTGCGAGTGATGATGATGGTGGTGGTGATAACAATGATGAGGTTGGCAATGGGGACTATGGTGTGGAAGATGATTCTGAGGATAATGAAAAGGGTAGTGGAGGATTGGTGAATAAGAAGAGGAAGAAAGGAATTAAAGCGGAGAAAGTGTCTCCAAGTGTCAAAAAATTGAAGGAATCTCCCAAGGAAGGTGTCAAGCAGAAGAAGAAAGCTGCCAAGGAAGGATTGGTCAAGAAGAGTGAAGATAAATTATCTGTTGAGGATGAGGGGTCAGGCAAGAAGAAGAAGAAGAGAGTGGATGTGAATGTAAAGACTAAGAGAAGTAAGAAGGCTGCGTGA 1227 0.4792 MASERGISPETLGKAVDSLLKWRKSQSETQKPKLFDQDEEFVYLVLTLKKIPQKGRVNPHKIPLPHSLLSPFSEQLLILDDRPNKARITKPQAQKKIQSESIPISKVLKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKQFFKKRKIPVPLDLKKNNWKEQVERACSAAMLFLRTGTCSVVRVAKLSMERDEIVENLVAAIDGVVEVVPKKWGNVRSFHVKLLDSIALPIYQVLPDLKLKIEGTKAEVEVQEKKKKEKDEAGEIKKKKKGRIHEVRYMDDEVGEDESASDDDGGGDNNDEVGNGDYGVEDDSEDNEKGSGGLVNKKRKKGIKAEKVSPSVKKLKESPKEGVKQKKKAAKEGLVKKSEDKLSVEDEGSGKKKKKRVDVNVKTKRSKKAA. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06376 408 MobiDBLite consensus disorder prediction 393 408 - -
Seca3g06376 408 Gene3D - 86 178 IPR016095 -
Seca3g06376 408 MobiDBLite consensus disorder prediction 293 322 - -
Seca3g06376 408 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 14 235 - -
Seca3g06376 408 SUPERFAMILY Ribosomal protein L1 21 241 IPR023674 -
Seca3g06376 408 CDD Ribosomal_L1 14 240 IPR028364 -
Seca3g06376 408 MobiDBLite consensus disorder prediction 285 408 - -
Seca3g06376 408 Coils Coil 251 271 - -
Seca3g06376 408 MobiDBLite consensus disorder prediction 343 392 - -
Seca3g06376 408 FunFam Ribosomal protein L1p/L10e family 86 177 - -
Seca3g06376 408 Pfam Ribosomal protein L1p/L10e family 20 235 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06376 Seca-Chr3 137502791 137504017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06376 129 231 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 30.097 3.88e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06376 K14775 - gmx:100782862 474.167