Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06371 ATGACCTGTTTTCCTTTCTCATTCAGTAAAGGTTCTTCTTCAGCAAGAAAAAATCCAGAAATTGATGAAGGTATTCATGATGTTAAAATATACACCTACAAAGAACTAAGAAATGCCACTGATGATTTTAGTCCGGCCAATAAAATTGGAGAGGGCGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAGTTGCTGCTATAAAAGTTCTTTCTGCTGAATCAAGACAAGGGGTAAATGAGTTCCTGACAGAGATTAATGTGATCTCTGAAATAGAGCATGAAAATTTGGTGAAGTTATATGGTTGTTGTGTGGAAAGAAATAACAGAATATTAGTCTACAATTACCTTGAGAATAACAGCCTTGCACAAACTCTTCTAGCTTTACTTCCAGGTGGAGGTCACAGTAGTATCTACTTTGATTGGAGAACACGATCTAGAATATGCATTGGGATTGCACATGGGCTTGCCTTTCTTCATGAAGAAGTAAGGCCTCTTATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGCTACTTGGCACCAGAGTATGCAATAGGAGGGAGGCTAACACGAAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGTAACACAAATTCACGATTACCAATAGAAGAACAATTTCTTCTCGAGAGGGCATGGGAATTTTATGAACGAAAGGAATTAGTAGGGCTGGTAGATACATCACTAAATGGAGAATTTGATGCTGAGCAGGCTTGTAATTTTCTGAAGATTGGCCTTCTTTGCACTCAGGAATCTCCAAAGCAACGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATTAATGTTGATGAAAGTACCATAACAAAACCAGCCTTAATTTCTGATTTTATGGATCTCAAAGTTAGAAAGAAAGAGGAAATTGATATTGGTACAAAGACTTTATCTACATTCAATACATCCTCTTCCTCAGACTACCAGGACACTACCATGTCATCAGCTACAACTACAACCTTCACAGCAAAATATGATCAAAGCATGTAA 1167 0.3873 MTCFPFSFSKGSSSARKNPEIDEGIHDVKIYTYKELRNATDDFSPANKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVNEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLENNSLAQTLLALLPGGGHSSIYFDWRTRSRICIGIAHGLAFLHEEVRPLIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERAWEFYERKELVGLVDTSLNGEFDAEQACNFLKIGLLCTQESPKQRPSMSSVVKMLTGKINVDESTITKPALISDFMDLKVRKKEEIDIGTKTLSTFNTSSSSDYQDTTMSSATTTTFTAKYDQSM. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06371 388 ProSiteProfiles Protein kinase domain profile. 43 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06371 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 360 - -
Seca3g06371 388 Pfam Protein kinase domain 46 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06371 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca3g06371 388 FunFam cold-responsive protein kinase 1 119 334 - -
Seca3g06371 388 Gene3D Transferase(Phosphotransferase) domain 1 119 336 - -
Seca3g06371 388 CDD STKc_IRAK 49 320 - -
Seca3g06371 388 SMART serkin_6 43 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06371 388 FunFam cold-responsive protein kinase 1 14 118 - -
Seca3g06371 388 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Seca3g06371 388 SUPERFAMILY Protein kinase-like (PK-like) 21 318 IPR011009 -
Seca3g06371 388 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06371 Seca-Chr3 137326297 137330987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06371 31 372 Receptor kinase-like Gene Family AT1G53430 51.603 1.15e-108 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g06371 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06371 - - gmx:100782320 634.409