Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g06365 | ATGCTTATATTAGTGGGAAACGTGCAAGGAACTATGAGTTCTCTTGCTTCCCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCACTGGAAGGTCCCATTCTGTTGTGAGGAGAGTGTCTCTTTCTAGAAGGAACTGTAAGGGGAACAGGAGATGGCATTGTGTCTCCTTGTCTGTCTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACAGTAGTAGTAAAGGTGGAGATAATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAAGCCTGTGTTAAAGAGTGACCCCATTTTAAGCTCTAGTTCTCAACGTTTGGGACCATCAAGGAATACTGAGGATTCTGATGATGTAGAAGAAAGGAATAAAGTGATTGAATCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGGAAATTCTAAGTTGGATGGTGAAAAAAATAATGGTTCAGTAAATAAACCAGCAAGATCAAATATGAATGCTAATCCTAAGGCTGATAAACCAGTAAATTCAACAAAATCCCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACTCGGTTGCAACTGTGCAAAAGATTGTGAAGGAAGTACCGAGGCCTGATAACAAGAATGAAGTGGGGAAATCTCAAACAGGGGGAGGGGAGAAGGTAACATCTCAGTCTCGTGCTCCTCAGCCTCCTTCAAAACCTCAACCAATGTTACAAACTAAGCCTTCTATAGCCCCCCCACCTATAAAAAGACCTGTTGTCTTGAAGGATAAGGGGCAAGCTGAAACATCTGTTAGATCTAAAGAAAAGAAGTCGCCCATCTTGGTTGATAAGTTTGCTACCAAGAAACCAGTTGTTGACCCTCTAATTGCTCAAGCAGTTCTAGCTCCTCCAAAACCAGGGAAGGCCCCTGCCCCAGGAAAGTTCAAAGAGGATTACCGGAAGAAAGGTGCTCCTGCTGGGGGACTAAGAAGACGAATGGTAGAGGATGATGATGTGATTCCTGACGAGGACACATCAGAGCTCAATGTCTCTATACCTGGTGCTGCAACAACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTCCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTTTAGAGGTTGGTGACCAAGGTATGCTGGTGGAGGATTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTATCTATACTCTATGGGGATTAAACCAGATGGGGTGCAAACCATAGACAAAGACATGGTGAAGATGATATGTAAAGAGTATGATGTTGAAGTCATAGATGCTGATCCTGTCAAAGTTGAAGGATTAGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCATTACTATTATGGGGCATGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACAGTTACCCTGTGTTTTCCTTGACACTCCTGGTCACGAGGCATTTGGGGCAATGAGAGCACGTGGAGCAAGTGTAACAGACATTGCCATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAGGACTGGGGTGGTGACATCCCAATGGTTCAGATAAGTGCTCTTCAAGGGAAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGGTAACTTGTAACTCTCCAACTATTCTATCACTTTATGTGATTATAAAAATATTGTTCTTATATTTTAGTATATTGATAGAAAGGCATATATTGTGTGATCAATAG | 2043 | 0.4283 | MLILVGNVQGTMSSLASPVSLGSLMGVSSTGRSHSVVRRVSLSRRNCKGNRRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSSKGGDNSAGFVLKPPPKPVLKSDPILSSSSQRLGPSRNTEDSDDVEERNKVIESLGEVLEKAEKLGNSKLDGEKNNGSVNKPARSNMNANPKADKPVNSTKSQKSKTLKSVWRKGDSVATVQKIVKEVPRPDNKNEVGKSQTGGGEKVTSQSRAPQPPSKPQPMLQTKPSIAPPPIKRPVVLKDKGQAETSVRSKEKKSPILVDKFATKKPVVDPLIAQAVLAPPKPGKAPAPGKFKEDYRKKGAPAGGLRRRMVEDDDVIPDEDTSELNVSIPGAATTRKGRKWSKASRKAARLQAAKDAAPVKVEILEVGDQGMLVEDLAYNLAISEGEILGYLYSMGIKPDGVQTIDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPVDGKQLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALQGKNVDDLLETVMLVAEVTCNSPTILSLYVIIKILFLYFSILIERHILCDQ. | 681 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 156 | 191 | - | - | |
Seca3g06365 | 680 | Pfam | Elongation factor Tu GTP binding domain | 483 | 643 | IPR000795 | GO:0003924|GO:0005525 | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 309 | 329 | - | - | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 74 | 91 | - | - | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 267 | 284 | - | - | |
Seca3g06365 | 680 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 472 | 645 | IPR027417 | - | |
Seca3g06365 | 680 | Gene3D | - | 475 | 651 | IPR027417 | - | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 74 | 133 | - | - | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 220 | 240 | - | - | |
Seca3g06365 | 680 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 159 | 649 | IPR015760 | - | |
Seca3g06365 | 680 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 478 | 653 | IPR000795 | GO:0003924|GO:0005525 | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 148 | 284 | - | - | |
Seca3g06365 | 680 | PRINTS | GTP-binding elongation factor signature | 482 | 495 | IPR000795 | GO:0003924|GO:0005525 | |
Seca3g06365 | 680 | PRINTS | GTP-binding elongation factor signature | 550 | 561 | IPR000795 | GO:0003924|GO:0005525 | |
Seca3g06365 | 680 | PRINTS | GTP-binding elongation factor signature | 534 | 544 | IPR000795 | GO:0003924|GO:0005525 | |
Seca3g06365 | 680 | PRINTS | GTP-binding elongation factor signature | 586 | 595 | IPR000795 | GO:0003924|GO:0005525 | |
Seca3g06365 | 680 | Pfam | Translation initiation factor IF-2, N-terminal region | 403 | 449 | IPR006847 | - | |
Seca3g06365 | 680 | NCBIfam | small GTP-binding protein domain | 480 | 641 | IPR005225 | GO:0005525 | |
Seca3g06365 | 680 | FunFam | Translation initiation factor IF-2 | 475 | 651 | - | - | |
Seca3g06365 | 680 | CDD | IF2_eIF5B | 481 | 647 | - | - | |
Seca3g06365 | 680 | MobiDBLite | consensus disorder prediction | 241 | 261 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g06365 | Seca-Chr3 | 137208949 | 137219470 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g06365 | 457 | 660 | Eukaryotic Initiation Factors Gene Family | AT1G76810 | 34.231 | 4.01e-25 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g06365 | K02519 | - | gmx:100818840 | 977.622 |