Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06365 ATGCTTATATTAGTGGGAAACGTGCAAGGAACTATGAGTTCTCTTGCTTCCCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCACTGGAAGGTCCCATTCTGTTGTGAGGAGAGTGTCTCTTTCTAGAAGGAACTGTAAGGGGAACAGGAGATGGCATTGTGTCTCCTTGTCTGTCTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACAGTAGTAGTAAAGGTGGAGATAATAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAAGCCTGTGTTAAAGAGTGACCCCATTTTAAGCTCTAGTTCTCAACGTTTGGGACCATCAAGGAATACTGAGGATTCTGATGATGTAGAAGAAAGGAATAAAGTGATTGAATCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGGAAATTCTAAGTTGGATGGTGAAAAAAATAATGGTTCAGTAAATAAACCAGCAAGATCAAATATGAATGCTAATCCTAAGGCTGATAAACCAGTAAATTCAACAAAATCCCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACTCGGTTGCAACTGTGCAAAAGATTGTGAAGGAAGTACCGAGGCCTGATAACAAGAATGAAGTGGGGAAATCTCAAACAGGGGGAGGGGAGAAGGTAACATCTCAGTCTCGTGCTCCTCAGCCTCCTTCAAAACCTCAACCAATGTTACAAACTAAGCCTTCTATAGCCCCCCCACCTATAAAAAGACCTGTTGTCTTGAAGGATAAGGGGCAAGCTGAAACATCTGTTAGATCTAAAGAAAAGAAGTCGCCCATCTTGGTTGATAAGTTTGCTACCAAGAAACCAGTTGTTGACCCTCTAATTGCTCAAGCAGTTCTAGCTCCTCCAAAACCAGGGAAGGCCCCTGCCCCAGGAAAGTTCAAAGAGGATTACCGGAAGAAAGGTGCTCCTGCTGGGGGACTAAGAAGACGAATGGTAGAGGATGATGATGTGATTCCTGACGAGGACACATCAGAGCTCAATGTCTCTATACCTGGTGCTGCAACAACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTCCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTTTAGAGGTTGGTGACCAAGGTATGCTGGTGGAGGATTTAGCCTACAATTTGGCAATCAGTGAAGGTGAAATCCTGGGTTATCTATACTCTATGGGGATTAAACCAGATGGGGTGCAAACCATAGACAAAGACATGGTGAAGATGATATGTAAAGAGTATGATGTTGAAGTCATAGATGCTGATCCTGTCAAAGTTGAAGGATTAGTGAAGAAAAGGGAAATTCTTGATGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCATTACTATTATGGGGCATGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGACCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTGTTGATGGCAAACAGTTACCCTGTGTTTTCCTTGACACTCCTGGTCACGAGGCATTTGGGGCAATGAGAGCACGTGGAGCAAGTGTAACAGACATTGCCATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAGGACTGGGGTGGTGACATCCCAATGGTTCAGATAAGTGCTCTTCAAGGGAAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGGTAACTTGTAACTCTCCAACTATTCTATCACTTTATGTGATTATAAAAATATTGTTCTTATATTTTAGTATATTGATAGAAAGGCATATATTGTGTGATCAATAG 2043 0.4283 MLILVGNVQGTMSSLASPVSLGSLMGVSSTGRSHSVVRRVSLSRRNCKGNRRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSSKGGDNSAGFVLKPPPKPVLKSDPILSSSSQRLGPSRNTEDSDDVEERNKVIESLGEVLEKAEKLGNSKLDGEKNNGSVNKPARSNMNANPKADKPVNSTKSQKSKTLKSVWRKGDSVATVQKIVKEVPRPDNKNEVGKSQTGGGEKVTSQSRAPQPPSKPQPMLQTKPSIAPPPIKRPVVLKDKGQAETSVRSKEKKSPILVDKFATKKPVVDPLIAQAVLAPPKPGKAPAPGKFKEDYRKKGAPAGGLRRRMVEDDDVIPDEDTSELNVSIPGAATTRKGRKWSKASRKAARLQAAKDAAPVKVEILEVGDQGMLVEDLAYNLAISEGEILGYLYSMGIKPDGVQTIDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPVDGKQLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALQGKNVDDLLETVMLVAEVTCNSPTILSLYVIIKILFLYFSILIERHILCDQ. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06365 680 MobiDBLite consensus disorder prediction 156 191 - -
Seca3g06365 680 Pfam Elongation factor Tu GTP binding domain 483 643 IPR000795 GO:0003924|GO:0005525
Seca3g06365 680 MobiDBLite consensus disorder prediction 309 329 - -
Seca3g06365 680 MobiDBLite consensus disorder prediction 74 91 - -
Seca3g06365 680 MobiDBLite consensus disorder prediction 267 284 - -
Seca3g06365 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 645 IPR027417 -
Seca3g06365 680 Gene3D - 475 651 IPR027417 -
Seca3g06365 680 MobiDBLite consensus disorder prediction 74 133 - -
Seca3g06365 680 MobiDBLite consensus disorder prediction 220 240 - -
Seca3g06365 680 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 159 649 IPR015760 -
Seca3g06365 680 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 478 653 IPR000795 GO:0003924|GO:0005525
Seca3g06365 680 MobiDBLite consensus disorder prediction 148 284 - -
Seca3g06365 680 PRINTS GTP-binding elongation factor signature 482 495 IPR000795 GO:0003924|GO:0005525
Seca3g06365 680 PRINTS GTP-binding elongation factor signature 550 561 IPR000795 GO:0003924|GO:0005525
Seca3g06365 680 PRINTS GTP-binding elongation factor signature 534 544 IPR000795 GO:0003924|GO:0005525
Seca3g06365 680 PRINTS GTP-binding elongation factor signature 586 595 IPR000795 GO:0003924|GO:0005525
Seca3g06365 680 Pfam Translation initiation factor IF-2, N-terminal region 403 449 IPR006847 -
Seca3g06365 680 NCBIfam small GTP-binding protein domain 480 641 IPR005225 GO:0005525
Seca3g06365 680 FunFam Translation initiation factor IF-2 475 651 - -
Seca3g06365 680 CDD IF2_eIF5B 481 647 - -
Seca3g06365 680 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06365 Seca-Chr3 137208949 137219470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06365 457 660 Eukaryotic Initiation Factors Gene Family AT1G76810 34.231 4.01e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06365 K02519 - gmx:100818840 977.622