Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06359 ATGGCTTTAGAGTTGAGTTTCCACTCCCAAAATGGGTTTTGCATGATGATGATGCTATTGTTTTGCTTTGGCATCATCCTTGTAAGTTCCACCAATGAAGAGGGTTCAAGCCTTTTGAAGTTCAAAAGTTCCCTTTTAGACCCAAATAACAACCTTCTTAACTGGAATCCTTCTGATTTGTCTCCTTGCAATTGGACTGGTGTGAATTGTACAGGTTCAGTTGTAACTTCTGTAAAACTTTACCACTTTAATCTCTCTGGTACTTTGTCTCCTTCCATCTGTAACCTTCCAAGGCTACTTGAGTTGAACCTGTCAAAAAACTTCATCTCTGGACCCATTCCTCAAGGTTTTGTTAACTGTGGTAGATTAGAGATTTTAGACCTTTGTACAAATAGGCTTCATGGACAACTTCTGACCCCTATTTGGAAACTCACAACACTTAGAAAGCTTTACCTCTGTGAAAATTATATGTATGGTGAAGTGCCAGAAGAGCTTGGGGATTTAGTATCACTTGAAGAGCTAGTCATTTATAGCAATAACTTAACTGGAAGAATTCCCCCATCAATCAGTAAGTTGAAGCAGCTTAGAGTTATCAGGGCAGGTCTAAATGGCTTCTCAGGGCCAATACCTGTAGAAATTAGTGAGTGTGAGAGCTTGGAGGTATTGGGTTTGGCACAGAATCAGTTAGTAGGTTCTATTCCAAAGGAGCTTCAAAAGCTTCAGAACCTTACCAATTTGATTCTATGGCAAAACTCTTTATCTGGGGAGATTCCTCCTGAGATTGGAAATATCAGTAGCTTGGAATTGCTTGCTTTGCATCAAAATTCATTTATTGGTGCTGTCCCCAAGGATCTTGGTAAGCTATCCAGGTTGAAGAGGTTGTACATGTACACCAACCAGTTGAATGGAACAATTCCACAAGAGCTTGGGAACTGTACAAATGCTGTTGAGATAGATCTATCTGAAAACCGTTTGAGTGGATTCATTCCCAAAGAGTTGGGTAAGATCTCTAATCTTAGCTTGCTCCATCTATTTGAAAACAATCTGGAGGGTCATATTCCAAGGGAGCTTGGGCAGTTGATGCAGCTAAGAAATTTAGACCTGTCACTGAACAACTTAACAGGTACAATTCCACTGGAGTTTCAAAATCTTACATACATGGAGGATTTACAGCTATTTGACAATCAACTTGAGGGTGTGATTCCTCCTCATCTTGGAGCTGTTAGAAACCTCACTATTCTTGATATATCTGCAAATAATCTTGTTGGTATGATACCTGTCCATCTTTGTGAATATCAGAAGCTGCAATTCCTTAGCCTTGGATCAAATAGGTTGTTTGGAAATATTCCTTATAGCCTGAAAACATGCAAGTCTCTTGTGCAGCTAATGCTGGGGGACAACCAGTTGACAGGAAGCCTACCTGTTGAACTGTATGAACTTCACAATCTTACTGCACTTGAACTTTATCAGAATAGATTCTCTGGAATAATAAACCCAGGGATAGGCCAATTGAGGAATTTAGAGAGGCTTCTCTTGGCAGATAACTATTTTGAGGGGTACCTCCCTTCTGAGATTGGAAATTTAGCACAACTTGTCACATTTAATGTTTCATCTAATCGTTTCAGTGGAAGTATACCTCATGAGTTGGGACACTGTGTAAGACTGCAGAGGCTTGATCTCAGCAGGAACAAATTCACTGGCATGCTTCCAAATGAAATTGGCAATCTGGTGAATTTGGAGCTGTTGAAAGTTTCTGATAATATGCTCTCTGGAGAAATACCAGGCACTTTGGGTGATCTTATTCGTCTCACAGACCTTGAGTTAGGTGGCAACCAATTCTCAGGAAGCATATCTTTTCATTTTGGAAGACTTGCTGCTCTTCAGATTGCCCTTAACTTGAGTCACAACAACCTTTCTGGCACAATTCCTGATAGCTTGGGGAACTTGCAAATGCTGGAATCCCTTTACTTAAATGACAATCAACTTGTTGGTGAAATTCCTGCATTAATTGGAGACCTTCCTAGTCTTTTAGTATGCAATGTATCTAACAACAAGCTGGAAGGAACTGTTCCAGACACCACTACATTTAGAAAGATGGATTCCACAAATTTTGTTGGGAACAATGGTTTGTGCCGTGTAGGTACCTATCACTGTCATCCATCAGTGGCTTCATCTCATCATGCAAAACCAAGCTGGATCAAAGATGGCTCATCAAGGGAAAAGATAGTGACCATTGTTTCTGGGGTGGTTGGACTAGTTTCTCTTATTTTCATAGTCTGCATATGTTGGACAATGAGGCGCCGTAGCCCTTCTTTTGTTTCACTTGAAGGGCAAACAAAGCCTCATGTCTTGGATAACTATTACTTTCCTAAAGAAGGCTTTAGATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCTGAAGCTGCAGTTATAGGAAGAGGAGCTTGTGGCACTGTGTACAAGGCTGTTATGAATGATGGTGAAGTGATTGCTGTCAAGAAGCTGAATTCGCGTGGAGATGGTGCAAATGTTGACAGAAGCTTCCTTGCAGAGATTTCAACACTTGGAAAGATCAGACACAGGAACATTGTGAAGCTGCATGGATTTTGTTATCATGAAGATTCTAATCTTCTATTGTATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCAAGTGCAAGCACATGTGCACTGGATTGGAGTTGTCGATATAACATTGCTCTAGGAGCAGCTGAAGGATTATGCTATCTTCATTATGATTGTAAACCTCAAATCATCCATCGTGATATTAAGTCAAACAACATTTTACTTGATCAAGTGTTTCAGGCTCATGTTGGAGACTTTGGCTTGGCAAAGTTGATTGACTTTTCCTACTCAAAATCCATGTCTGCTGTGGCAGGTTCATATGGCTACATTGCCCCAGAATATGCTTATACCATGAAGGTAACTGAGAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACTGGGAGGTCACCTGTTCAACCATTGGAACAGGGTGGTGATTTAGTAAGTTGGGTGAGAAGAGCAATTCAAGCAGCTGTACCAACATCTGAATTATTTGATAAGCGATTGAATCTGAGTGAACAAAGAACAGTTGAAGAGATGTCTCTTATTCTCAAAATTGCTTTGTTTTGCACCAGCACATCTCCACTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATACAAGGGAATATGTCAGCCATTCACCAACCACTCCTACATCTGAATCTCCACTGGATGAAGATGGAGGTTCTTCTTCTAAAGGTTACAAAGCTGAAAAGTTCATAATTATTGTTATTTTTTTGGGTAATTGA 3375 0.4018 MALELSFHSQNGFCMMMMLLFCFGIILVSSTNEEGSSLLKFKSSLLDPNNNLLNWNPSDLSPCNWTGVNCTGSVVTSVKLYHFNLSGTLSPSICNLPRLLELNLSKNFISGPIPQGFVNCGRLEILDLCTNRLHGQLLTPIWKLTTLRKLYLCENYMYGEVPEELGDLVSLEELVIYSNNLTGRIPPSISKLKQLRVIRAGLNGFSGPIPVEISECESLEVLGLAQNQLVGSIPKELQKLQNLTNLILWQNSLSGEIPPEIGNISSLELLALHQNSFIGAVPKDLGKLSRLKRLYMYTNQLNGTIPQELGNCTNAVEIDLSENRLSGFIPKELGKISNLSLLHLFENNLEGHIPRELGQLMQLRNLDLSLNNLTGTIPLEFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPVHLCEYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFSGIINPGIGQLRNLERLLLADNYFEGYLPSEIGNLAQLVTFNVSSNRFSGSIPHELGHCVRLQRLDLSRNKFTGMLPNEIGNLVNLELLKVSDNMLSGEIPGTLGDLIRLTDLELGGNQFSGSISFHFGRLAALQIALNLSHNNLSGTIPDSLGNLQMLESLYLNDNQLVGEIPALIGDLPSLLVCNVSNNKLEGTVPDTTTFRKMDSTNFVGNNGLCRVGTYHCHPSVASSHHAKPSWIKDGSSREKIVTIVSGVVGLVSLIFIVCICWTMRRRSPSFVSLEGQTKPHVLDNYYFPKEGFRYQDLLEATGNFSEAAVIGRGACGTVYKAVMNDGEVIAVKKLNSRGDGANVDRSFLAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYEYMENGSLGEQLHSSASTCALDWSCRYNIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVSWVRRAIQAAVPTSELFDKRLNLSEQRTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDTREYVSHSPTTPTSESPLDEDGGSSSKGYKAEKFIIIVIFLGN. 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06359 1124 Gene3D Transferase(Phosphotransferase) domain 1 884 1095 - -
Seca3g06359 1124 Gene3D Phosphorylase Kinase; domain 1 775 883 - -
Seca3g06359 1124 ProSiteProfiles Protein kinase domain profile. 806 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06359 1124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Seca3g06359 1124 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 410 531 - -
Seca3g06359 1124 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 408 722 - -
Seca3g06359 1124 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Seca3g06359 1124 Pfam Protein kinase domain 808 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06359 1124 Gene3D Ribonuclease Inhibitor 391 726 IPR032675 -
Seca3g06359 1124 SUPERFAMILY L domain-like 33 302 - -
Seca3g06359 1124 Gene3D Ribonuclease Inhibitor 30 180 IPR032675 -
Seca3g06359 1124 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 884 1096 - -
Seca3g06359 1124 ProSiteProfiles Leucine-rich repeat profile. 362 383 IPR001611 GO:0005515
Seca3g06359 1124 SMART LRR_typ_2 336 360 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 408 432 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 168 192 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 480 504 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 528 552 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 288 312 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 96 120 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 240 264 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 576 600 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 553 575 IPR003591 -
Seca3g06359 1124 SMART LRR_typ_2 649 673 IPR003591 -
Seca3g06359 1124 SUPERFAMILY RNI-like 371 688 - -
Seca3g06359 1124 SUPERFAMILY Protein kinase-like (PK-like) 783 1079 IPR011009 -
Seca3g06359 1124 MobiDBLite consensus disorder prediction 1087 1107 - -
Seca3g06359 1124 MobiDBLite consensus disorder prediction 1087 1102 - -
Seca3g06359 1124 SMART serkin_6 806 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06359 1124 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 31 182 - -
Seca3g06359 1124 Gene3D Ribonuclease Inhibitor 181 280 IPR032675 -
Seca3g06359 1124 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 883 - -
Seca3g06359 1124 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 183 281 - -
Seca3g06359 1124 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 282 384 - -
Seca3g06359 1124 Gene3D Ribonuclease Inhibitor 281 390 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06359 Seca-Chr3 137079136 137084144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06359 56 1083 Receptor kinase-like Gene Family AT1G73080 38.383 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g06359 Pkinase 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06359 - - gmx:100818311 1903.64