Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06353 ATGGAGTGCAATAAGGATAAGGCCATCATAGCTAAAGAAATTGCTGAGAAAAAGTTAGTTGCAAATGACATTTTGGGAGCAAGAAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTAGTCTTGATGGTATTTCTCAAATGTTAACAACAATTAATGTGTATAGTTCTGCTACTAATGAAATAAATGGTAAAGTAGTCCAAAATTGGTATGGTATACTTGGTGTGGATCCCCTGGCTGATGATGACACATTGAGGAAACAATATAGAAAGTTGGTTCATGTGCTTCACCCTGATAATAACAAGTCCATTGGTACAGATTGGGCCTTTAAACTAGTTTCAGAGGCATGGAATGTACTATCTGATAAGGCTAAAAGGGTAGCATATGATGAGAAGATAAATGCAAGGATTCAGGGGAAAACTGCTGAAGGGATTAGCAAGAAACCAAGTCAAATTCAGATAGATTCTAATGACAAAACAAGAGTGAAAGAGATCATTGGAAATGGCTACCAAAACGCAAATGAGGAAGGCGGAAAATCTGTAAGAAACTCAGATGGAAGAATGACTGGATTCGAAGCCATGAATTTATTTACAGGCACTACCACATATGATGACATGGAGGAGATGTCATCAATAGATGCCCCAGATCCTCATTTCTATTGTTTTGACTTGGATCGAATTGAAGGATCTTTTAGTGAAAATCAAGTATGGGCTGCATTTGATGAAGACGAAGGGATGCCTCGATATTATGCAATTATACACAATGTCATTTCTGTGAATCCATTCAAGATGCAGTTCAACTGGCTCCACATGAAGAAGACCGAGGTTGAAAGGACCCCAACTCTGAATTGGGGTGCGTCGCGCTTTTCAAGAGCTTGTGGGAATTTCGAAATGGGAAGATATGCAGTCACTAACACATTCAATTTTTTCTCTCACAAAGTGAGATATAAAAAGGGTAATGATGGAACTATTTTTATATATCCTAGGAAAGGGGATGTTTGGGCACTCTATAGAAATTGGTCTTCCAACTGGAATAGACTAACACATGATGAGGTGACACAAAAGTATGATATGGTTGAAGTACTTGATGTCTTCGATGATTTCATTGTCATTCCTCTAGTCAAAGTGGCTGGTTTTAGGACAATATTTCGTCGTGAGTTGGATTTGAGAGAAATCAGGGTCATTCCTAGGAAAGAAATATTGCGGTTCTCTCATCAGGTCCCTTCAACCATACTTAGTGGTGAAGAAGCTCTAGATGCCCCAAAGGGTTGCTGGGAGTTGGACCCAACATCTATTTCATCTGAACATCTTGAGGTAATCGAAGTTGTGAAGGACAAAGACATTGTTATGGTCAACAATGAGGATACTATAATTAAAGAAACAACAAATGATAGCTTGAAAGAAGTTGATAGTGAGGAAATGAACAATGATATGTGA 1434 0.3835 MECNKDKAIIAKEIAEKKLVANDILGARKFALKAQSLFPSLDGISQMLTTINVYSSATNEINGKVVQNWYGILGVDPLADDDTLRKQYRKLVHVLHPDNNKSIGTDWAFKLVSEAWNVLSDKAKRVAYDEKINARIQGKTAEGISKKPSQIQIDSNDKTRVKEIIGNGYQNANEEGGKSVRNSDGRMTGFEAMNLFTGTTTYDDMEEMSSIDAPDPHFYCFDLDRIEGSFSENQVWAAFDEDEGMPRYYAIIHNVISVNPFKMQFNWLHMKKTEVERTPTLNWGASRFSRACGNFEMGRYAVTNTFNFFSHKVRYKKGNDGTIFIYPRKGDVWALYRNWSSNWNRLTHDEVTQKYDMVEVLDVFDDFIVIPLVKVAGFRTIFRRELDLREIRVIPRKEILRFSHQVPSTILSGEEALDAPKGCWELDPTSISSEHLEVIEVVKDKDIVMVNNEDTIIKETTNDSLKEVDSEEMNNDM. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06353 477 SUPERFAMILY Chaperone J-domain 67 132 IPR036869 -
Seca3g06353 477 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca3g06353 477 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca3g06353 477 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca3g06353 477 PRINTS DnaJ domain signature 124 143 IPR001623 -
Seca3g06353 477 Pfam DnaJ domain 68 129 IPR001623 -
Seca3g06353 477 Gene3D DnaJ domain 65 183 IPR036869 -
Seca3g06353 477 Pfam Domain of unknown function (DUF3444) 209 415 IPR024593 -
Seca3g06353 477 PANTHER BNAC03G44070D PROTEIN 1 431 - -
Seca3g06353 477 SMART dnaj_3 67 124 IPR001623 -
Seca3g06353 477 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca3g06353 477 CDD DnaJ 68 121 IPR001623 -
Seca3g06353 477 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06353 Seca-Chr3 136911031 136912464 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06353 4 133 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.806 6.99e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06353 - - cpap:110823946 427.557