Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06346 ATGGCTAATGAGGTGGTTCTGCTTGATTTCTGGCCAAGTCCTTTTGGAATGAGGATAAGGATAGCACTTGCTGAAAAGGGTATCAAGTATGAGTACAAAGAAGAGGACTTGAGGAACAAGAGTCCTCTGCTCCTTCAAATGAACCCTGTTCACAAGAAAATCCCGGTTCTCATCCACAAGGGAAAGTCCATTTGTGAATCTCTCGTTGCTGTTCAGTACATTGATGAGGTCTGGAATGATAGATCTCCCTTGTTGCCTTCTGACCCTTATCAGAGGGCCCAGGCTAGATTCTGGGCTCACTTTGTTGACAAGAAGATATATGAACTTGGAAGGAACGTTTGGACCAAAAAAGGAGAAGAACAAGAAGCTGCCAAGAAAGAATTCATAGATGCCCTCAAATTGTTGGAGGAACAGTTGGGAGACAAGACATATTTTGGGGGAGACAAGCTTGGTTTTGTGGATATTGCAGTTGTTCCATTCTACAGTTGGTTCAAAGCCTATGAGACCTTTGGCAACCTGAACATAGAGAGTGAGTGCCCAAAGTTCATTGCTTGGGCTAAGAGATGCTTTCAGATAGAGAGCGTTTCCAAGTCTGTTCCTGACCAGCAGAAGGTCTATGCAATGGAAGATGAGGTGATTCTGTTGAATTTCTGGCTAAGCCCTTATGGGATGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAGTATGAGAATAGAGAAGAGGACTTTAGCAACAAGAGCCCCTTACTCCTACAAATGAACCCAATTCATAAGAAAATACCAGTTCTCATCCACAATGGCAAATCCATTTGTGAGTCACTCATTGCTATTGAGTATATTGATGAGGTTTGGAATAATCAATCTCCATTGTTACCTTCTGATCATTACCAGAGAGCTCAAGCTAGATTCTGGGCTAATTACATTGACAATAAGAGGTTTTGGAAAACTGAAGGAGAAGAGAAAGAAGCTGCCAAGAAAGATTTACTTGAGTCTCTTAAATTGTTGGAAGAACAGCTGGGAAACAAACCTTATTTTGGTGGAGACAATCTTGGCCTTGTGGATGTAGCTCTTATTCCTTTGTTCTGTTGGTTAAATACCGATAGTTTCACTGGAAAATTCATTGATGAAGCTCAGTATCCCAATATCATTGCTTGGGCCAAGAGGTGCACTAAAAAAGAGACAATGGCAGATGAGGTGACTCTATTGAATTTCTGGCTAAGCCCTTATGGGATGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAGTATGAGAATAGAGAAGAGGACCTTAGCAACAAGAGCCCTTTACTCCTCCTACAAATGAACCCAGTTCATAAGAAAATACCAGTTCTCATCCACAATGGCAAATCCATATGTGAGTCACTCATTGCCATTGAGTATATTGATGAGGTTTTGAATAATCAATCTCCATTGTTGCCTTCTGATCCTTACCAGAGAGCTGAAGCTAGATTCTGGGCTAATTACATTGACAATAAGACATATGAGACTGCCATCAGGTTTTGGAAAACTGAAGGAGAAGAGAAAGAAGCTGCCAAGAAAGATTTCCTTGAATCTCTTAAATTGTTGGAAGAACAGTTGGGAAACAAACCTTATTTTGGTGGAGACAATCTTGGCCTTGTGGATGTGACTCTTGTTCCTCTGTTCTGTTTGTTAAATACCGATAGTTTCACCGGAAAATTCATTGATGAAGCTCGGTATCCCAATATCATTGCTTGGGCCAAGAGGTGCACTCAAAAAGAGTGTGTGTCCAAGACTTTTCCAGAGGAGCACAAGGTCAAACGTTTTTTACAGGAGATAGGATTTAAACATTGA 1839 0.4154 MANEVVLLDFWPSPFGMRIRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVLIHKGKSICESLVAVQYIDEVWNDRSPLLPSDPYQRAQARFWAHFVDKKIYELGRNVWTKKGEEQEAAKKEFIDALKLLEEQLGDKTYFGGDKLGFVDIAVVPFYSWFKAYETFGNLNIESECPKFIAWAKRCFQIESVSKSVPDQQKVYAMEDEVILLNFWLSPYGMRVRIALEEKGIKYENREEDFSNKSPLLLQMNPIHKKIPVLIHNGKSICESLIAIEYIDEVWNNQSPLLPSDHYQRAQARFWANYIDNKRFWKTEGEEKEAAKKDLLESLKLLEEQLGNKPYFGGDNLGLVDVALIPLFCWLNTDSFTGKFIDEAQYPNIIAWAKRCTKKETMADEVTLLNFWLSPYGMRVRIALEEKGIKYENREEDLSNKSPLLLLQMNPVHKKIPVLIHNGKSICESLIAIEYIDEVLNNQSPLLPSDPYQRAEARFWANYIDNKTYETAIRFWKTEGEEKEAAKKDFLESLKLLEEQLGNKPYFGGDNLGLVDVTLVPLFCLLNTDSFTGKFIDEARYPNIIAWAKRCTQKECVSKTFPEEHKVKRFLQEIGFKH. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06346 612 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 295 410 IPR010987 -
Seca3g06346 612 CDD GST_C_Tau 485 608 IPR045074 GO:0004364|GO:0006749
Seca3g06346 612 Gene3D - 484 611 - -
Seca3g06346 612 Gene3D - 88 211 - -
Seca3g06346 612 Pfam Glutathione S-transferase, C-terminal domain 317 392 IPR004046 -
Seca3g06346 612 Coils Coil 319 339 - -
Seca3g06346 612 SUPERFAMILY Thioredoxin-like 212 314 IPR036249 -
Seca3g06346 612 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 484 604 IPR010987 -
Seca3g06346 612 CDD GST_N_Tau 5 78 - -
Seca3g06346 612 SUPERFAMILY Thioredoxin-like 400 502 IPR036249 -
Seca3g06346 612 SUPERFAMILY GST C-terminal domain-like 476 606 IPR036282 -
Seca3g06346 612 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
Seca3g06346 612 SFLD Main (cytGST) 2 207 - -
Seca3g06346 612 SFLD Main (cytGST) 396 607 - -
Seca3g06346 612 CDD GST_C_Tau 89 207 IPR045074 GO:0004364|GO:0006749
Seca3g06346 612 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 206 IPR045073 -
Seca3g06346 612 FunFam Tau class glutathione S-transferase 206 294 - -
Seca3g06346 612 Pfam Glutathione S-transferase, N-terminal domain 6 76 IPR004045 -
Seca3g06346 612 Pfam Glutathione S-transferase, N-terminal domain 212 283 IPR004045 -
Seca3g06346 612 Pfam Glutathione S-transferase, N-terminal domain 400 472 IPR004045 -
Seca3g06346 612 FunFam Tau class glutathione S-transferase 1 87 - -
Seca3g06346 612 Pfam Glutathione S-transferase, C-terminal domain 122 188 - -
Seca3g06346 612 Pfam Glutathione S-transferase, C-terminal domain 516 584 - -
Seca3g06346 612 SFLD Main.3: Omega- and Tau-like 396 607 IPR045073 -
Seca3g06346 612 SFLD Main.3: Omega- and Tau-like 2 207 IPR045073 -
Seca3g06346 612 SFLD Main.3: Omega- and Tau-like 208 396 IPR045073 -
Seca3g06346 612 SFLD Glutathione Transferase (cytosolic) 208 396 IPR040079 -
Seca3g06346 612 CDD GST_N_Tau 212 285 - -
Seca3g06346 612 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 210 289 IPR004045 -
Seca3g06346 612 CDD GST_C_Tau 297 405 IPR045074 GO:0004364|GO:0006749
Seca3g06346 612 SUPERFAMILY GST C-terminal domain-like 76 207 IPR036282 -
Seca3g06346 612 FunFam Tau class glutathione S-transferase 395 483 - -
Seca3g06346 612 CDD GST_N_Tau 400 473 - -
Seca3g06346 612 Gene3D - 294 398 - -
Seca3g06346 612 SUPERFAMILY GST C-terminal domain-like 283 406 IPR036282 -
Seca3g06346 612 Gene3D Glutaredoxin 399 483 - -
Seca3g06346 612 Gene3D Glutaredoxin 212 293 - -
Seca3g06346 612 Gene3D Glutaredoxin 1 87 - -
Seca3g06346 612 SUPERFAMILY Thioredoxin-like 4 106 IPR036249 -
Seca3g06346 612 Coils Coil 118 138 - -
Seca3g06346 612 FunFam Glutathione S-transferase U20 88 213 - -
Seca3g06346 612 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 398 478 IPR004045 -
Seca3g06346 612 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06346 Seca-Chr3 136656353 136664710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06346 396 608 Glutathione S-transferase Gene Family AT1G78380 55.869 1.33e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06346 K00799 - cave:132171408 529.635