Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06344 ATGGCTGATGAGGTGGTTTTGCTTGATTTCTGGCCAAGTCCTTTTGGGATGAGGGTAAGGATAGCACTTGCTGAAAAGGGTATCAAGTATGAGTACAAAGAAGAGGACTTGAGGAACAAGAGTCCTCTGCTCCTTCAAATGAACCCTGTTCACAAGAAAATCCCGGTTCTCATTCACAAGGGCAAGTCCATTTGTGAATCTCTCATTGCTGTTCAGTACATTGATGAGGTCTGGAATGATAGATCCCCCTTGTTGCCTTCTGACCCTTATCAGAGGGCCCAGGCTAGATTCTGGGCTGACTTTGTTGACAAGAAGCAGATATATGAACTTGGAAGGAATGTTTGGACCAAAAAAGGAGAAGAACAAGAAGCTGCCAAGAAAGAATTCATAGATGCCCTCAAATTGTTGGAGGAACAGTTGGGAGACAAGACATATTTTGGGGGAGACAAGCTTGGTTTTGTGGATATTGCACTTGTTCCATTCTATAGTTGGTTCAAAGCCTATGAGACCTTTGGCAACCTGAACATAGAGAGTGTGTGCCCAAAGTTCATTGCTTGGGCCAAGAGATGCTTTCAGATAGAGAGCGTTTCCAAGTCTGTTCCTGACCAGCAGAAGGTCTATGACTTCATTGTGGAGCTCAGAAAGAAGTTGGGTGTTGAGTAG 663 0.4434 MADEVVLLDFWPSPFGMRVRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVLIHKGKSICESLIAVQYIDEVWNDRSPLLPSDPYQRAQARFWADFVDKKQIYELGRNVWTKKGEEQEAAKKEFIDALKLLEEQLGDKTYFGGDKLGFVDIALVPFYSWFKAYETFGNLNIESVCPKFIAWAKRCFQIESVSKSVPDQQKVYDFIVELRKKLGVE. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06344 220 SUPERFAMILY GST C-terminal domain-like 76 217 IPR036282 -
Seca3g06344 220 Pfam Glutathione S-transferase, C-terminal domain 123 189 - -
Seca3g06344 220 FunFam Glutathione S-transferase U20 88 220 - -
Seca3g06344 220 Pfam Glutathione S-transferase, N-terminal domain 6 76 IPR004045 -
Seca3g06344 220 CDD GST_C_Tau 89 213 IPR045074 GO:0004364|GO:0006749
Seca3g06344 220 Gene3D Glutaredoxin 1 87 - -
Seca3g06344 220 Gene3D - 88 220 - -
Seca3g06344 220 CDD GST_N_Tau 5 78 - -
Seca3g06344 220 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Seca3g06344 220 Coils Coil 119 139 - -
Seca3g06344 220 SFLD Main (cytGST) 2 217 - -
Seca3g06344 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 208 IPR045073 -
Seca3g06344 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Seca3g06344 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Seca3g06344 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 209 IPR010987 -
Seca3g06344 220 FunFam Tau class glutathione S-transferase 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06344 Seca-Chr3 136641886 136643778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06344 1 220 Glutathione S-transferase Gene Family AT1G17180 67.727 1.09e-114 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06344 K00799 - gmx:547520 407.142