Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06342 ATGACAGATGAGGTGGTTCTGCTTGATTTCTGGCCAAGTCCTTTTGGTATGAGGGTCAGGATAGCACTTGCTGAAAAGGGTATCAAGTATGAGTACAAAGAAGAGGAGGACTTGGTGAGGAACAAGAGTCCTCTGCTCCTCCAAATGAACCCTGTTCACAAGAAAATCCCGGTTCTAATCCACAAGGGAAAGCCAGTTTGTGAATCTCTTATTGCTGTTGAGTACATTGATGAGGTCTGGAACGAAAGGTCTCCCTTGTTGCCTTCTGACCCTTATCAGAGAGCCCAGGCCAGATTCTGGGCTGACTTTGTTGACAAGAAGATATATGAAATTGGAAGGATCTTTTATACCAAAAAAGGAGAAGAGCACGAAGCTGCCAAGAAGGAATTCATAGATGCCCTCAAATTGTTGGAGGAACAGTTGGGAGACAAGACATATTTTGGAGGAGACAAGCTTGGTTTTGTGGATATAGCACTTGTTCCATTCTACAGTTGGTTTAAAGCTTATGAGACCTTTGGCAACCTCAACACAGAGAGGGACTGTCCCAAGTTCACTGCTTGGGCCAAGAGATGCCTCAAGATAGAGAGCGTTTCCAAGTCTCTTCCTGACCAGCAGAAGGTCTATGAGTTCATTGTGGAGCTCAGAAAATATTTAGGCATTGTGTAG 666 0.4444 MTDEVVLLDFWPSPFGMRVRIALAEKGIKYEYKEEEDLVRNKSPLLLQMNPVHKKIPVLIHKGKPVCESLIAVEYIDEVWNERSPLLPSDPYQRAQARFWADFVDKKIYEIGRIFYTKKGEEHEAAKKEFIDALKLLEEQLGDKTYFGGDKLGFVDIALVPFYSWFKAYETFGNLNTERDCPKFTAWAKRCLKIESVSKSLPDQQKVYEFIVELRKYLGIV. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06342 221 Pfam Glutathione S-transferase, C-terminal domain 122 190 - -
Seca3g06342 221 Gene3D - 90 221 - -
Seca3g06342 221 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Seca3g06342 221 Coils Coil 120 140 - -
Seca3g06342 221 CDD GST_N_Tau 5 80 - -
Seca3g06342 221 CDD GST_C_Tau 91 214 IPR045074 GO:0004364|GO:0006749
Seca3g06342 221 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Seca3g06342 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Seca3g06342 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 209 IPR045073 -
Seca3g06342 221 FunFam Glutathione S-transferase U20 90 221 - -
Seca3g06342 221 SUPERFAMILY GST C-terminal domain-like 78 218 IPR036282 -
Seca3g06342 221 Gene3D Glutaredoxin 1 89 - -
Seca3g06342 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Seca3g06342 221 SFLD Main (cytGST) 2 217 - -
Seca3g06342 221 FunFam Tau class glutathione S-transferase 1 89 - -
Seca3g06342 221 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06342 Seca-Chr3 136574183 136576407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06342 1 220 Glutathione S-transferase Gene Family AT1G17180 66.818 1.36e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06342 K00799 - gmx:547520 382.874