Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06327 ATGGATTGGAACGAGAAACATGTCCTTGATTTCTTAGGTTCATGCCGGAGAATCATTCGGTGTTTTGGCAATGACTACACCTTCGAGAATGGTGAAGAGTATTACAATTTAGCTCAAGTTCCACGGTGGCCGGATTCCGGAGCAACGCGTTCGGAGTTACACGAGAACATAATCGTGTTCGGTGATGGAGAGATCAAAATTGTTGATTTTGGTCTTGCGAAGGAAACAGGGGTGAAACAGAGCAAGGAGAAAGGTTCGAGTATGTGGTCGTTGTTGCTTCGAATTGGAGTGAGAGAAGAATTACCGGAGATACCAGAGGAATTATCGAAGGAAGGAAAGGATTTTCTTGAGAAGTGTTTCGTGAAGGATCCGAGAAAGAGATGGACGGCTGAGATGCTTTTGAAGCACCCTTTTGTGGATGGTGATGACATTGTTTCATTGAAGAATATGAAGAATGAGTCACGAAGAAGCCACTTTGATTTCCCTGATTAG 492 0.437 MDWNEKHVLDFLGSCRRIIRCFGNDYTFENGEEYYNLAQVPRWPDSGATRSELHENIIVFGDGEIKIVDFGLAKETGVKQSKEKGSSMWSLLLRIGVREELPEIPEELSKEGKDFLEKCFVKDPRKRWTAEMLLKHPFVDGDDIVSLKNMKNESRRSHFDFPD. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06327 163 Gene3D Transferase(Phosphotransferase) domain 1 51 160 - -
Seca3g06327 163 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 87 149 - -
Seca3g06327 163 SUPERFAMILY Protein kinase-like (PK-like) 55 148 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06327 Seca-Chr3 135860505 135861198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06327 4 163 MAP Kinase Kinase Kinase AT5G67080 37.354 1.76e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g06327 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06327 - - gmx:100798607 182.956