Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06324 ATGGCAGTAGTCTCTGAGTCCTCTAGCATCTCTGCCACCTCAGCAACCATTTCCATCAAAGTTGATGAAGAAGTCAACAAAATGGAGAAGGAGGAAGACACCAAATCATCTGAGCAAGATCAGGTTTCAAATTCTGATAATTCTCATATGGTTCTTGATTTTGTGAAACTACCCACAAATGATTCTGTTCCTAGTGGGTCCAAGTTGCAGGAAATTGATTTTTTCAGTCCAGAGTATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAGCAAGGACAACAATGAAGGGAGAGATGAGAACACTGAGGAAAAGACAAACTCAGAGTCAAGGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTGCTTCACAAGCTTTGGGAGGGCACCAAAATGCACACAAACAACAACGTGCACTAACAAAGTGTCCCCAAGAGATTCAAAACAATGTTGGTGCTTTGAGTCACGCTCATCACTTTCCTTATTACCCTTATCATAGTCTTTCCAACACACGCCCTTATAATTGGCCACTTGGGGTTAGGATGGAGTCCATGATTCACAAGCCATCCTATTCAAATTCCCCACTTGGATTCAGATATGGTCATGGTCATGGTGTTATGTGGCCATCAATCCTAAACTACCCTTCTTCTCGTGATAGATTATGGATTGAGGGTGGTGGGATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAAATGATCATGATGGTGGGAGAACTATTCGAGCCATTCTCCAATTGGGAGAGTCCTCTGCAAATGCTGCTACAAGATCAAACTTAGACATAAATAAAGGTGATCATCATTCCAACAATGAAGAACCCTCCAACTCCGAATCATCCGGCCTTGATCTTTCATTAAAGCTTTAA 888 0.4167 MAVVSESSSISATSATISIKVDEEVNKMEKEEDTKSSEQDQVSNSDNSHMVLDFVKLPTNDSVPSGSKLQEIDFFSPEYKGSSSCWANSSSKDNNEGRDENTEEKTNSESRTFSCNFCDRKFSASQALGGHQNAHKQQRALTKCPQEIQNNVGALSHAHHFPYYPYHSLSNTRPYNWPLGVRMESMIHKPSYSNSPLGFRYGHGHGVMWPSILNYPSSRDRLWIEGGGILGASSTSRIENDHDGGRTIRAILQLGESSANAATRSNLDINKGDHHSNNEEPSNSESSGLDLSLKL. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06324 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 295 IPR044246 GO:0009788
Seca3g06324 295 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Seca3g06324 295 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g06324 295 Coils Coil 21 41 - -
Seca3g06324 295 MobiDBLite consensus disorder prediction 22 39 - -
Seca3g06324 295 MobiDBLite consensus disorder prediction 93 107 - -
Seca3g06324 295 Gene3D Classic Zinc Finger 89 159 - -
Seca3g06324 295 MobiDBLite consensus disorder prediction 1 51 - -
Seca3g06324 295 MobiDBLite consensus disorder prediction 281 295 - -
Seca3g06324 295 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
Seca3g06324 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Seca3g06324 295 MobiDBLite consensus disorder prediction 267 295 - -
Seca3g06324 295 MobiDBLite consensus disorder prediction 81 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06324 Seca-Chr3 134824545 134825432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06324 103 217 C2H2 Transcription Factor Family AT5G25160 39.024 1.26e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g06324 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06324 - - gmx:102663393 216.083