Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06322 ATGGCAGTAGTCTCTGAGTCCTCTAGCATCTCTGCCACCTCAGCAACCATTTCCATCAAAGTTGATGAAGAAGTCAACAAAATGGAGAAGGAGGAGGAAATCAAATCCTCTGAACAAGATCAGGTTTCAAATTCTCATATGGTTCTTGATTTTGTGAAACTACCCACAGATGATTCTGTTCCTAGTGGGTCCAAGTTGCAGGAACTTGATTTTTTCAGTCCAAAGAATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAACAACAACAATGAAGGGAAGGATGAGAACAGAGAGGAAAAGACAAACTCAGAGTCAAGGACGTTCTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCACACAAACAACAACGTGCACTAACAAAGCGTCCCCAAGAGATTCAAAACAATGTTGGCGTTTTGGGGCACCCTCATCACTTTCCTTATTACCCTTATGCTAGTCTTTCCAACAGACGCCCCTATAATTGGCCACTTGGGGTTAGGATGGAGTCCATGATTCAGAAGCCATCCTATTCAAATTCCCCACTTGGATTCAGATATGGTCATGATCATGGTGTTATGTGGCCATCAATCCTAAACCCTTCTTCTCATGATAGATTAAGGATTGATCAGATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAAATGATCATGATGGTGGGAGAACTATTCGAGCCATTCTCCAATTGGGAGAGTCCTCTGCAAATGCTGCTACAAGATCAAATAAAGGTGATCATCATTCCAACAATCAAGAACCCTCCAACTCTGAATCCTCTGGGCTTGACCTTTCACTGAAGCTTTCAACTTTTGAAGTTTTCTTTCGTTATATATATCTATTAACGTTCTTGTTTGATTGCTACGATCTCTAG 921 0.4137 MAVVSESSSISATSATISIKVDEEVNKMEKEEEIKSSEQDQVSNSHMVLDFVKLPTDDSVPSGSKLQELDFFSPKNKGSSSCWANSSNNNNEGKDENREEKTNSESRTFSCNFCDRKFSSSQALGGHQNAHKQQRALTKRPQEIQNNVGVLGHPHHFPYYPYASLSNRRPYNWPLGVRMESMIQKPSYSNSPLGFRYGHDHGVMWPSILNPSSHDRLRIDQILGASSTSRIENDHDGGRTIRAILQLGESSANAATRSNKGDHHSNNQEPSNSESSGLDLSLKLSTFEVFFRYIYLLTFLFDCYDL. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06322 306 Gene3D Classic Zinc Finger 86 150 - -
Seca3g06322 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Seca3g06322 306 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g06322 306 MobiDBLite consensus disorder prediction 252 278 - -
Seca3g06322 306 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Seca3g06322 306 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 284 IPR044246 GO:0009788
Seca3g06322 306 MobiDBLite consensus disorder prediction 22 39 - -
Seca3g06322 306 SUPERFAMILY beta-beta-alpha zinc fingers 106 136 IPR036236 -
Seca3g06322 306 MobiDBLite consensus disorder prediction 65 106 - -
Seca3g06322 306 MobiDBLite consensus disorder prediction 1 45 - -
Seca3g06322 306 MobiDBLite consensus disorder prediction 73 91 - -
Seca3g06322 306 Coils Coil 20 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06322 Seca-Chr3 134718437 134719357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06322 102 212 C2H2 Transcription Factor Family AT5G10970 42.857 4.56e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g06322 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06322 - - gmx:102663393 196.438