Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06319 ATGGAGAAGGAGGAAGACACCAAATCATCTGAACAAAATCAGGTTTCAAATTCTGATAATTCTCATATGGTTCTTGATTTTGTGAAACTACCCACAAATGATTCTGTTCCTAGTGGGTCCAAGTTGCAGGAAATTGATTTTTTCAGTCCAGAGTATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAGCAAGGACAACAATGAAGGGGGAGATGAGAACACTGAGGAAAAGACAAACTCAGAGTCAAGGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCACCAAAATGCACACAAACAACAACGTGCACTAACAAAGCGTCCCCAAGTGATTCAAAACAATGTTGGTGCTTTGAGGCACGCTCATCACTTTCCTTATTACCCTTATCATAGTCTTTCCAACACACGCCCTTATAATTGGCCACTTGGTGTTAGGATGGAGTCCATGATTCAGAAGCCATCATATTCAAATTCCCCACTTGGATTCAGATATGGTCATGGTGTTATGTGGCCATCAATCCTAAACCCTTCTTCTCATGATAGATTAAGGATTGATCAGATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAAATGATCATGATGGTGGGAGAACTATTCGAGCCATTCTCCAATTGGGAGAGTCCTCTGCAAATGCTGCTACAAGATCAAACTTAGACATAAATAAGCCAAATATAGCCCCCAAAGGTGATCATCATTCCAACAATCAAGAACCCTCCAACTCTGAATCCTCTGGGCTTGATCTTTCACTGAAGCTTTAA 810 0.4086 MEKEEDTKSSEQNQVSNSDNSHMVLDFVKLPTNDSVPSGSKLQEIDFFSPEYKGSSSCWANSSSKDNNEGGDENTEEKTNSESRTFSCNFCDRKFSSSQALGGHQNAHKQQRALTKRPQVIQNNVGALRHAHHFPYYPYHSLSNTRPYNWPLGVRMESMIQKPSYSNSPLGFRYGHGVMWPSILNPSSHDRLRIDQILGASSTSRIENDHDGGRTIRAILQLGESSANAATRSNLDINKPNIAPKGDHHSNNQEPSNSESSGLDLSLKL. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06319 269 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 269 IPR044246 GO:0009788
Seca3g06319 269 MobiDBLite consensus disorder prediction 245 269 - -
Seca3g06319 269 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Seca3g06319 269 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Seca3g06319 269 MobiDBLite consensus disorder prediction 230 269 - -
Seca3g06319 269 Gene3D Classic Zinc Finger 62 131 - -
Seca3g06319 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Seca3g06319 269 MobiDBLite consensus disorder prediction 54 68 - -
Seca3g06319 269 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06319 Seca-Chr3 134631439 134632248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06319 79 183 C2H2 Transcription Factor Family AT5G10970 43.810 6.84e-18 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g06319 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06319 - - gmx:102663393 202.601