LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g06315	ATGGCTGCGGTTGCTGACATTCCCGCTGATGCCAACAAAATAGACTCAAAACCAAAGCCAGAATCTGAATTCACTGTGCAGAAGCTGGTTGACATGTTCACAAAGCTGAATCCTTTGGCGAAGGAGTTTTTTCCTTCATCATATTCTCACAACCTTGATCATCGCCATCAGGGCTATAATCAGTTCACACCCACCAATTTTCTGGTCAACACTAAGCCCTCACCTAATGACAATTTCCCAAACAATCGAAGGAGAAGAAATAATTTTACCCAAGGGAGGAGAAGGTTGAATGGACGATCACTAAAGGCTCAGAGAGAAGATAGCGTTAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGTAGTTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACACTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAACATGGTGCAAGGACAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCAGTGAATCCTACATTCCTCCCTAGGTCTGATGATGAGCGGGAAATGTGTACCCGGACCGTCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAGGTTACGCGCTTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCATTGGCAGAAAGTGCCATTATTGCGCTAAACTGCAGTGGGATGCTCTTGGGAACCCAGCCTATCAGGGTAAGTCCTTCGAAGACTCCAGTGAGGCCAAGAGTCACTCGTCCAACATCACATTAA	891	0.4388	MAAVADIPADANKIDSKPKPESEFTVQKLVDMFTKLNPLAKEFFPSSYSHNLDHRHQGYNQFTPTNFLVNTKPSPNDNFPNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEHGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFALAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPTSH.	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g06315	296	CDD	RRM1_CID8_like	109	188	IPR034823	-
	Seca3g06315	296	MobiDBLite	consensus disorder prediction	71	103	-	-
	Seca3g06315	296	Gene3D	-	196	290	IPR012677	-
	Seca3g06315	296	Gene3D	-	70	187	IPR012677	-
	Seca3g06315	296	MobiDBLite	consensus disorder prediction	71	86	-	-
	Seca3g06315	296	MobiDBLite	consensus disorder prediction	1	20	-	-
	Seca3g06315	296	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	208	284	IPR000504	GO:0003723
	Seca3g06315	296	CDD	RRM2_CID8_like	204	285	IPR034825	-
	Seca3g06315	296	Pfam	Ataxin-2 C-terminal region	32	47	IPR009818	-
	Seca3g06315	296	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	186	IPR000504	GO:0003723
	Seca3g06315	296	SMART	rrm1_1	209	280	IPR000504	GO:0003723
	Seca3g06315	296	SMART	rrm1_1	112	182	IPR000504	GO:0003723
	Seca3g06315	296	FunFam	Polyadenylate-binding protein-interacting protein 11	76	188	-	-
	Seca3g06315	296	SUPERFAMILY	RNA-binding domain, RBD	198	290	IPR035979	GO:0003676
	Seca3g06315	296	SUPERFAMILY	RNA-binding domain, RBD	75	187	IPR035979	GO:0003676
	Seca3g06315	296	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	32	290	-	-
	Seca3g06315	296	FunFam	Polyadenylate-binding protein-interacting protein 10	202	280	-	-
	Seca3g06315	296	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	175	IPR000504	GO:0003723
	Seca3g06315	296	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	210	277	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g06315	Seca-Chr3	134553114	134561494	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g06315	108	265	Eukaryotic Initiation Factors Gene Family	AT1G34140	27.329	2.27e-12	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g06315	-		-	gmx:100818291	518.85