Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06301 ATGGATTTCGGTATGAGGAATAGCAATGCAGAGTATGGTGCGAGAAACAAGAGAGAACATGAGAGTGAAGCAGAGAGAGCGAGTTCAAGAGCGAGTGATGACGAGGAAAATGGATCAACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACTCCACTCTCAATCCTAAGCAGAAACTTGCACTTGCAAAACAGTTGAATCTTCGTCCTCGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGTAA 282 0.4326 MDFGMRNSNAEYGARNKREHESEAERASSRASDDEENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06301 93 SMART HOX_1 39 93 IPR001356 GO:0003677
Seca3g06301 93 Pfam Homeodomain 41 93 IPR001356 GO:0003677
Seca3g06301 93 Coils Coil 17 37 - -
Seca3g06301 93 ProSiteProfiles 'Homeobox' domain profile. 37 93 IPR001356 GO:0003677
Seca3g06301 93 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g06301 93 MobiDBLite consensus disorder prediction 12 48 - -
Seca3g06301 93 SUPERFAMILY Homeodomain-like 31 93 IPR009057 -
Seca3g06301 93 CDD homeodomain 41 93 IPR001356 GO:0003677
Seca3g06301 93 FunFam Homeobox-leucine zipper protein HAT22 45 91 - -
Seca3g06301 93 Gene3D - 46 93 - -
Seca3g06301 93 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06301 Seca-Chr3 133602341 133602721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06301 1 93 Homeobox Transcription Factor Family AT5G06710 71.717 2.08e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g06301 Homeodomain 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06301 K09338 - gmx:100779138 134.42