Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06269 ATGACCGACGAAGACAAACCCAGAGCCTTCCCCAGCGACCACCACCACCACCCTCCACCGCAGCCTCAGCCTTTTCCGGCGGCTCAATACGGCACCTTCCAAGGCGTCTCTAACTACCCTCCTCCTCCGCCGGACCCACACCCCGCCATCGGCTTCCCTCACCCCGTTCCGCCGCCCGGCGCCGTCGATCCTTCCGCCCCTCCTCCGCCGTATTATCCTCACGGGTACCAAGCAGTTCCCGGTTATGCAGTTGCTGAAGGAAGACCAGTGAGAGAACGCCGCCTTGGTTGCTGTGGTCTTGGTTGCGGCTGGTGCCTGTTTATATTAGGTTTCTTTCTTGGTGGTATTCCATGGTATGTTGGGGCAATAATTATGCTTTGTTCCAGAGTAGACTACCGAGAGAAACCTGGATATATTGCTTGTATAGTTGCTGCTGTTCTGGCTACAATTGCCATTATTCTTGGAGTGACAAAGGCAACAGATGACTGGTAA 492 0.5508 MTDEDKPRAFPSDHHHHPPPQPQPFPAAQYGTFQGVSNYPPPPPDPHPAIGFPHPVPPPGAVDPSAPPPPYYPHGYQAVPGYAVAEGRPVRERRLGCCGLGCGWCLFILGFFLGGIPWYVGAIIMLCSRVDYREKPGYIACIVAAVLATIAIILGVTKATDDW. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06269 163 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 3 163 IPR044804 -
Seca3g06269 163 MobiDBLite consensus disorder prediction 1 15 - -
Seca3g06269 163 MobiDBLite consensus disorder prediction 37 59 - -
Seca3g06269 163 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06269 Seca-Chr3 132945950 132949973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06269 3 163 Cytoplasmic Ribosomal Protein Gene Family AT1G29970 31.797 3.25e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06269 - - gmx:100781376 179.874