Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06260 ATGATGAGGAGGTTCAGTGGTTCCGTTATCGAAGGAGAGGCATACAAGATGCATTATTTCGGTGTTGTTCGCAACCTGGGTTCATACCGATCAACAAAGCATGAGTTTAAGTTGGTTTTTCATCCGAGAACAAGAATAATGAGGTGTGATGTAGGTAACATTTCCTTGCATGGGCTTTCTCCCATGAATACTCAAGAGATAATGAGCACTAATGGTCGTAGCGACTATCTTGTGGATACGATTGGAGTCATGACTGCTGTGTCTGCTGAAAAACGTTCATTCCGTGATGGTCGCATGACTAGGGTGATGCAGATGGAGCTAACTGATGACAAGGGGAAGATTCAATGTGCTATGTTTGGCAACTATGTTGATATGGTGGGGGATTTATTGCATGGGATTGGCAACGAATTGCCTGTTGTAGTGGTTATGTTTGCGAAGGTGAAGATGTACAAAGGTGAGGTGGTTTTGCAGAATGTTTTAAACACCACCAAAATACTCTGCAATCCTAACATTCCTGAAGTAGAGACTTTCCGTGATGGACTCACTATCCATGGTATAGATATACTAGCACCAATGGGTGTTATACAGGAAGACCATCAAAGCATTCCCCTGAAGGAAGAGTTCCTTGCATCCCATCCTAGGAAAACGATCAAACAACTTCATAACACTGAAGAGGATGGATTGTTCATTGTTTTGGCTTCGATAGTCACTGTCATTGGCAATGCTAACTGGTGGTATGCGGCCTGCAAATGCCATCGAGCTGTGACAATGGATGGTGACTCTTATTACTGCTCAGCATGTGGCATGCATGTGCAAGAAGTCTCTTCTAGGTTCAAGTTGAAACTTGAGGTATATGATGGCGAAGATACTGTTGCTTTCGTGCTTTTTGATTCAGATTCTGAGATGTTACTTGGTCGCAGTTGTGCTGCCATGTTATCTGACTTGAAGGATAATCCTCCTGATGACGTTTCATCCCTTTTTGACGACATTGCTGGAAAAGAAGTTTTATTCAAAGTTGAGAAACCGTCTGACTATGCTTTCAAATTTGATGACTCTTTCCGAGTGAAGAAAATTTGTTGTGATACCTCTATTATCAACGAATTCAAGGATGAAAATGCTGTCGTTACACCGGATGCTAGAGTTTTACGTGTTCCATTTCCTAACTTGGATGATATTCCTCAGGATGATGGTGGTAGAGGCGCAATACCTGGAGAAGAGTCTAAAGATACGTGTGTTGAACTGAATCCAGTTTCTTTAGATGAGGTGGTAAGTCCATCGGCAAAATGTTATGGAACCAATGAATCTGGGACAAGTAATGCTGCAAAGGAACGTGTCAAAGGGAAGAAAAAGCTGAAGCTCAAGGAAGCGGTTGTTTAG 1377 0.4227 MMRRFSGSVIEGEAYKMHYFGVVRNLGSYRSTKHEFKLVFHPRTRIMRCDVGNISLHGLSPMNTQEIMSTNGRSDYLVDTIGVMTAVSAEKRSFRDGRMTRVMQMELTDDKGKIQCAMFGNYVDMVGDLLHGIGNELPVVVVMFAKVKMYKGEVVLQNVLNTTKILCNPNIPEVETFRDGLTIHGIDILAPMGVIQEDHQSIPLKEEFLASHPRKTIKQLHNTEEDGLFIVLASIVTVIGNANWWYAACKCHRAVTMDGDSYYCSACGMHVQEVSSRFKLKLEVYDGEDTVAFVLFDSDSEMLLGRSCAAMLSDLKDNPPDDVSSLFDDIAGKEVLFKVEKPSDYAFKFDDSFRVKKICCDTSIINEFKDENAVVTPDARVLRVPFPNLDDIPQDDGGRGAIPGEESKDTCVELNPVSLDEVVSPSAKCYGTNESGTSNAAKERVKGKKKLKLKEAVV. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06260 458 CDD RPA1_DBD_C 215 339 IPR047192 -
Seca3g06260 458 Pfam Replication factor-A C terminal domain 230 358 IPR013955 -
Seca3g06260 458 CDD RPA1_DBD_B_like 79 178 - -
Seca3g06260 458 Gene3D - 207 369 IPR012340 -
Seca3g06260 458 PANTHER OS03G0429900 PROTEIN 137 323 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g06260 458 SUPERFAMILY Nucleic acid-binding proteins 65 185 IPR012340 -
Seca3g06260 458 SUPERFAMILY Nucleic acid-binding proteins 212 366 IPR012340 -
Seca3g06260 458 Gene3D - 61 185 IPR012340 -
Seca3g06260 458 Gene3D - 1 50 IPR012340 -
Seca3g06260 458 Pfam Domain of unknown function DUF223 7 51 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06260 Seca-Chr3 132767028 132769620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06260 77 316 Core DNA Replication Machinery Family AT5G08020 27.237 1.12e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06260 - - lja:Lj1g3v3385890.1 363.614