Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06249 ATGAGGTTTACGAGTTACATAGCACAGTGGAGAATTGCAGCGAAAGGAGCACTGGACCGCACAGCGATAACAGTGAAATTCCTATGCTGGCTTCACTTCACCAACAACTACCTTTGCTCCCCAACTCACGTGTATGGGCCCAGCATGCTCCCCACCCTCAATCTCGCCGGCGACGTCGTTATCGCCGAGCATCTCTCTCCGCGCCTCGGGAACCTCGGCCATGGAGACTTGGTTCTGGTGCGGTCCCCTTTGAACCCTAATCGGAGCTTGACCAAGCGCATCGTCGCCATGGAAGGAGAAACGATCACTTACTTTGACCCTTTGCACGCTGATGCTGCTCAAGTTGCAGTGGTGTGTGTGCTTAATGGTTCCAAAGGGGCATGTTTGGATTCAAGGGGATAA 402 0.5348 MRFTSYIAQWRIAAKGALDRTAITVKFLCWLHFTNNYLCSPTHVYGPSMLPTLNLAGDVVIAEHLSPRLGNLGHGDLVLVRSPLNPNRSLTKRIVAMEGETITYFDPLHADAAQVAVVCVLNGSKGACLDSRG. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06249 133 Pfam Signal peptidase, peptidase S26 25 105 IPR019533 GO:0004252|GO:0006465
Seca3g06249 133 CDD S26_SPase_I 40 99 IPR019533 GO:0004252|GO:0006465
Seca3g06249 133 Gene3D Umud Fragment, subunit A 34 132 - -
Seca3g06249 133 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 9 118 - -
Seca3g06249 133 SUPERFAMILY LexA/Signal peptidase 37 105 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06249 Seca-Chr3 132327942 132334390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06249 49 118 MADS-box Gene Family AT1G29960 40.845 1.97e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06249 K09647 - cave:132173278 172.555