Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06232 ATGTGCTTTTTGATGGATCCTCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCATAGAGTTGATGGTATTGATACTCATGATCATTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATAAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGGATATGA 174 0.3908 MCFLMDPQTGKKVCYVQFPHRVDGIDTHDHYANRNTVFFDINIKGLDGIQGPVYVGI. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06232 57 Pfam Cellulose synthase 1 56 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca3g06232 57 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06232 Seca-Chr3 132000739 132001044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06232 1 56 Cell Wall Biosynthesis AT5G17420 89.286 9.90e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06232 K10999 - gmx:100815436 116.701